Hb_005605_010

Information

Type -
Description -
Location Contig5605: 8161-9094
Sequence    

Annotation

kegg
ID pop:POPTR_0019s13220g
description hypothetical protein
nr
ID XP_006371567.1
description hypothetical protein POPTR_0019s13220g [Populus trichocarpa]
swissprot
ID Q9ASQ5
description Calmodulin-binding receptor-like cytoplasmic kinase 3 OS=Arabidopsis thaliana GN=CRCK3 PE=2 SV=1
trembl
ID U5FGG5
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0019s13220g PE=3 SV=1
Gene Ontology
ID GO:0016020
description probable lrr receptor-like serine threonine-protein kinase at3g47570

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_48761: 8544-8931
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005605_010 0.0 - - hypothetical protein POPTR_0019s13220g [Populus trichocarpa]
2 Hb_005245_110 0.030101833 - - hypothetical protein CISIN_1g0225141mg [Citrus sinensis]
3 Hb_000083_020 0.0365954722 - - hypothetical protein JCGZ_24970 [Jatropha curcas]
4 Hb_000482_170 0.0411651244 transcription factor TF Family: C2C2-GATA GATA nirate-inducible carbon-metabolism involved protein [Populus nigra x Populus x canadensis]
5 Hb_004837_230 0.0451293799 - - unknown [Populus trichocarpa]
6 Hb_006901_010 0.0486045207 - - hypothetical protein JCGZ_20722 [Jatropha curcas]
7 Hb_003921_010 0.0568755257 - - conserved hypothetical protein [Ricinus communis]
8 Hb_006665_020 0.0589383913 - - PREDICTED: protein NUCLEAR FUSION DEFECTIVE 4-like [Jatropha curcas]
9 Hb_002014_140 0.0602459305 transcription factor TF Family: M-type mads box protein, putative [Ricinus communis]
10 Hb_001823_010 0.0627282146 - - PREDICTED: ribosome-inactivating protein cucurmosin-like [Jatropha curcas]
11 Hb_004525_010 0.0660343669 - - late embryogenesis abundant, putative [Ricinus communis]
12 Hb_000640_090 0.0700461432 - - PREDICTED: calvin cycle protein CP12-2, chloroplastic-like [Jatropha curcas]
13 Hb_002893_200 0.0726130109 - - aldehyde dehydrogenase, putative [Ricinus communis]
14 Hb_000985_150 0.0745556214 - - PREDICTED: subtilisin-like protease SBT5.3 [Jatropha curcas]
15 Hb_000334_290 0.0764119287 - - monovalent cation:proton antiporter, putative [Ricinus communis]
16 Hb_007101_120 0.0770280024 - - PREDICTED: uncharacterized protein LOC105649846 [Jatropha curcas]
17 Hb_001621_090 0.078259989 - - hypothetical protein POPTR_0010s20810g [Populus trichocarpa]
18 Hb_000191_090 0.0785157745 transcription factor TF Family: MYB GHMYB10, putative [Theobroma cacao]
19 Hb_185830_050 0.0814787368 - - PREDICTED: probable galactinol--sucrose galactosyltransferase 2 [Jatropha curcas]
20 Hb_107748_010 0.0827380338 - - PREDICTED: 7-deoxyloganetic acid glucosyltransferase-like isoform X2 [Jatropha curcas]

Gene co-expression network

sample Hb_005605_010 Hb_005605_010 Hb_005245_110 Hb_005245_110 Hb_005605_010--Hb_005245_110 Hb_000083_020 Hb_000083_020 Hb_005605_010--Hb_000083_020 Hb_000482_170 Hb_000482_170 Hb_005605_010--Hb_000482_170 Hb_004837_230 Hb_004837_230 Hb_005605_010--Hb_004837_230 Hb_006901_010 Hb_006901_010 Hb_005605_010--Hb_006901_010 Hb_003921_010 Hb_003921_010 Hb_005605_010--Hb_003921_010 Hb_005245_110--Hb_003921_010 Hb_005245_110--Hb_004837_230 Hb_005245_110--Hb_000083_020 Hb_005245_110--Hb_000482_170 Hb_001823_010 Hb_001823_010 Hb_005245_110--Hb_001823_010 Hb_000083_020--Hb_001823_010 Hb_000083_020--Hb_006901_010 Hb_000083_020--Hb_000482_170 Hb_002014_140 Hb_002014_140 Hb_000083_020--Hb_002014_140 Hb_000482_170--Hb_006901_010 Hb_000482_170--Hb_002014_140 Hb_000482_170--Hb_001823_010 Hb_004837_230--Hb_000083_020 Hb_004525_010 Hb_004525_010 Hb_004837_230--Hb_004525_010 Hb_007101_120 Hb_007101_120 Hb_004837_230--Hb_007101_120 Hb_004837_230--Hb_000482_170 Hb_006901_010--Hb_002014_140 Hb_002893_200 Hb_002893_200 Hb_006901_010--Hb_002893_200 Hb_000334_290 Hb_000334_290 Hb_006901_010--Hb_000334_290 Hb_003921_010--Hb_004837_230 Hb_000003_490 Hb_000003_490 Hb_003921_010--Hb_000003_490 Hb_003921_010--Hb_001823_010 Hb_000191_090 Hb_000191_090 Hb_003921_010--Hb_000191_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0345266 3.94995 0.413074 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 6.24587

CAGE analysis