Hb_000003_490

Information

Type -
Description -
Location Contig3: 348985-349908
Sequence    

Annotation

kegg
ID pop:POPTR_0001s18890g
description POPTRDRAFT_751839; hypothetical protein
nr
ID XP_012069104.1
description PREDICTED: uncharacterized protein LOC105631559 isoform X2 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID B9GGL6
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0001s18890g PE=4 SV=2
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000003_490 0.0 - - PREDICTED: uncharacterized protein LOC105631559 isoform X2 [Jatropha curcas]
2 Hb_001823_010 0.0615874252 - - PREDICTED: ribosome-inactivating protein cucurmosin-like [Jatropha curcas]
3 Hb_000191_090 0.0618777657 transcription factor TF Family: MYB GHMYB10, putative [Theobroma cacao]
4 Hb_003921_010 0.0651008354 - - conserved hypothetical protein [Ricinus communis]
5 Hb_005245_110 0.0716531564 - - hypothetical protein CISIN_1g0225141mg [Citrus sinensis]
6 Hb_099182_010 0.0742745077 - - PREDICTED: uncharacterized protein LOC101214783 [Cucumis sativus]
7 Hb_000482_170 0.0772739574 transcription factor TF Family: C2C2-GATA GATA nirate-inducible carbon-metabolism involved protein [Populus nigra x Populus x canadensis]
8 Hb_040323_010 0.0778126347 - - -
9 Hb_004724_440 0.0816800894 - - conserved hypothetical protein [Ricinus communis]
10 Hb_008484_080 0.0869947328 - - PREDICTED: crocetin glucosyltransferase, chloroplastic-like [Jatropha curcas]
11 Hb_000083_020 0.0872704965 - - hypothetical protein JCGZ_24970 [Jatropha curcas]
12 Hb_005605_010 0.0909261048 - - hypothetical protein POPTR_0019s13220g [Populus trichocarpa]
13 Hb_004837_230 0.0927562509 - - unknown [Populus trichocarpa]
14 Hb_000011_510 0.0936090614 - - Esterase precursor, putative [Ricinus communis]
15 Hb_096267_010 0.0939586583 - - hypothetical protein POPTR_0008s06270g [Populus trichocarpa]
16 Hb_007101_120 0.0946193269 - - PREDICTED: uncharacterized protein LOC105649846 [Jatropha curcas]
17 Hb_171810_030 0.0996052651 - - PREDICTED: oligopeptide transporter 6-like [Jatropha curcas]
18 Hb_001736_010 0.1005851283 - - ring finger protein, putative [Ricinus communis]
19 Hb_000165_170 0.1022161459 transcription factor TF Family: G2-like hypothetical protein POPTR_0010s19310g [Populus trichocarpa]
20 Hb_011537_140 0.10281296 - - hypothetical protein POPTR_0001s05320g [Populus trichocarpa]

Gene co-expression network

sample Hb_000003_490 Hb_000003_490 Hb_001823_010 Hb_001823_010 Hb_000003_490--Hb_001823_010 Hb_000191_090 Hb_000191_090 Hb_000003_490--Hb_000191_090 Hb_003921_010 Hb_003921_010 Hb_000003_490--Hb_003921_010 Hb_005245_110 Hb_005245_110 Hb_000003_490--Hb_005245_110 Hb_099182_010 Hb_099182_010 Hb_000003_490--Hb_099182_010 Hb_000482_170 Hb_000482_170 Hb_000003_490--Hb_000482_170 Hb_000083_020 Hb_000083_020 Hb_001823_010--Hb_000083_020 Hb_001736_010 Hb_001736_010 Hb_001823_010--Hb_001736_010 Hb_001823_010--Hb_000482_170 Hb_001823_010--Hb_005245_110 Hb_005605_010 Hb_005605_010 Hb_001823_010--Hb_005605_010 Hb_000191_090--Hb_099182_010 Hb_040323_010 Hb_040323_010 Hb_000191_090--Hb_040323_010 Hb_004724_440 Hb_004724_440 Hb_000191_090--Hb_004724_440 Hb_008484_080 Hb_008484_080 Hb_000191_090--Hb_008484_080 Hb_171810_030 Hb_171810_030 Hb_000191_090--Hb_171810_030 Hb_023313_050 Hb_023313_050 Hb_000191_090--Hb_023313_050 Hb_003921_010--Hb_005245_110 Hb_003921_010--Hb_005605_010 Hb_004837_230 Hb_004837_230 Hb_003921_010--Hb_004837_230 Hb_003921_010--Hb_001823_010 Hb_003921_010--Hb_000191_090 Hb_005245_110--Hb_005605_010 Hb_005245_110--Hb_004837_230 Hb_005245_110--Hb_000083_020 Hb_005245_110--Hb_000482_170 Hb_099182_010--Hb_008484_080 Hb_099182_010--Hb_040323_010 Hb_099182_010--Hb_023313_050 Hb_002434_040 Hb_002434_040 Hb_099182_010--Hb_002434_040 Hb_099182_010--Hb_171810_030 Hb_006901_010 Hb_006901_010 Hb_000482_170--Hb_006901_010 Hb_000482_170--Hb_005605_010 Hb_000482_170--Hb_000083_020 Hb_002014_140 Hb_002014_140 Hb_000482_170--Hb_002014_140
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 8.82663 0.430453 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 9.91484

CAGE analysis