Hb_023313_050

Information

Type transcription factor
Description TF Family: Rcd1-like
Location Contig23313: 58495-64144
Sequence    

Annotation

kegg
ID rcu:RCOM_0752590
description Cell differentiation protein rcd1, putative
nr
ID XP_012080605.1
description PREDICTED: cell differentiation protein rcd1-like [Jatropha curcas]
swissprot
ID Q5PQL2
description Cell differentiation protein RCD1 homolog OS=Rattus norvegicus GN=Rqcd1 PE=1 SV=1
trembl
ID A0A067K701
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_13716 PE=4 SV=1
Gene Ontology
ID GO:0005488
description cell differentiation protein rcd1 homolog

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_24498: 60587-64298
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_023313_050 0.0 transcription factor TF Family: Rcd1-like PREDICTED: cell differentiation protein rcd1-like [Jatropha curcas]
2 Hb_002434_040 0.0068234683 - - hypothetical protein CICLE_v10022672mg [Citrus clementina]
3 Hb_000053_010 0.0127812532 - - hypothetical protein PRUPE_ppa017696mg [Prunus persica]
4 Hb_000977_250 0.0271452883 - - Anthranilate N-benzoyltransferase protein, putative [Ricinus communis]
5 Hb_171810_030 0.0310317419 - - PREDICTED: oligopeptide transporter 6-like [Jatropha curcas]
6 Hb_014361_160 0.03159643 transcription factor TF Family: GRAS SCL domain class transcription factor [Theobroma cacao]
7 Hb_099182_010 0.0381502178 - - PREDICTED: uncharacterized protein LOC101214783 [Cucumis sativus]
8 Hb_040323_010 0.0389325162 - - -
9 Hb_001170_020 0.0420484303 - - conserved hypothetical protein [Ricinus communis]
10 Hb_011433_010 0.0479166521 - - PREDICTED: (R)-mandelonitrile lyase-like [Populus euphratica]
11 Hb_008484_080 0.0484779293 - - PREDICTED: crocetin glucosyltransferase, chloroplastic-like [Jatropha curcas]
12 Hb_003605_170 0.0502206028 - - hypothetical protein POPTR_0013s12020g [Populus trichocarpa]
13 Hb_003050_380 0.0516488511 - - hypothetical protein POPTR_0007s03380g [Populus trichocarpa]
14 Hb_000297_190 0.0546058245 - - cell wall invertase [Manihot esculenta]
15 Hb_000210_020 0.0566265998 transcription factor TF Family: OFP Ovate family protein 13, putative [Theobroma cacao]
16 Hb_005888_020 0.0572016944 - - PREDICTED: uncharacterized protein LOC105127729 [Populus euphratica]
17 Hb_003392_060 0.0579399502 - - Flavonol 4'-sulfotransferase, putative [Ricinus communis]
18 Hb_003836_040 0.0579994937 - - PREDICTED: cytochrome P450 77A3-like [Jatropha curcas]
19 Hb_000191_090 0.0583280076 transcription factor TF Family: MYB GHMYB10, putative [Theobroma cacao]
20 Hb_004724_440 0.0601842975 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_023313_050 Hb_023313_050 Hb_002434_040 Hb_002434_040 Hb_023313_050--Hb_002434_040 Hb_000053_010 Hb_000053_010 Hb_023313_050--Hb_000053_010 Hb_000977_250 Hb_000977_250 Hb_023313_050--Hb_000977_250 Hb_171810_030 Hb_171810_030 Hb_023313_050--Hb_171810_030 Hb_014361_160 Hb_014361_160 Hb_023313_050--Hb_014361_160 Hb_099182_010 Hb_099182_010 Hb_023313_050--Hb_099182_010 Hb_002434_040--Hb_000053_010 Hb_002434_040--Hb_000977_250 Hb_002434_040--Hb_014361_160 Hb_002434_040--Hb_171810_030 Hb_040323_010 Hb_040323_010 Hb_002434_040--Hb_040323_010 Hb_000053_010--Hb_014361_160 Hb_000053_010--Hb_000977_250 Hb_000053_010--Hb_171810_030 Hb_011433_010 Hb_011433_010 Hb_000053_010--Hb_011433_010 Hb_001170_020 Hb_001170_020 Hb_000977_250--Hb_001170_020 Hb_003605_170 Hb_003605_170 Hb_000977_250--Hb_003605_170 Hb_000977_250--Hb_014361_160 Hb_171810_030--Hb_014361_160 Hb_171810_030--Hb_040323_010 Hb_003392_060 Hb_003392_060 Hb_171810_030--Hb_003392_060 Hb_014361_160--Hb_011433_010 Hb_014361_160--Hb_003392_060 Hb_000191_090 Hb_000191_090 Hb_099182_010--Hb_000191_090 Hb_008484_080 Hb_008484_080 Hb_099182_010--Hb_008484_080 Hb_099182_010--Hb_040323_010 Hb_099182_010--Hb_002434_040 Hb_099182_010--Hb_171810_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.257357 0.0419643 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0.263457

CAGE analysis