Hb_002434_040

Information

Type -
Description -
Location Contig2434: 86059-86484
Sequence    

Annotation

kegg
ID cic:CICLE_v10022672mg
description hypothetical protein
nr
ID XP_006443666.1
description hypothetical protein CICLE_v10022672mg [Citrus clementina]
swissprot
ID -
description -
trembl
ID V4U408
description Uncharacterized protein OS=Citrus clementina GN=CICLE_v10022672mg PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_25429: 85775-86527
cDNA
(Sanger)
(ID:Location)		 004_O12.ab1: 85824-86527 , 037_E07.ab1: 85882-86527 , 048_D20.ab1: 85822-86526 , 048_L06.ab1: 85805-86527

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002434_040 0.0 - - hypothetical protein CICLE_v10022672mg [Citrus clementina]
2 Hb_000053_010 0.0060370901 - - hypothetical protein PRUPE_ppa017696mg [Prunus persica]
3 Hb_023313_050 0.0068234683 transcription factor TF Family: Rcd1-like PREDICTED: cell differentiation protein rcd1-like [Jatropha curcas]
4 Hb_000977_250 0.0262853609 - - Anthranilate N-benzoyltransferase protein, putative [Ricinus communis]
5 Hb_014361_160 0.0266630302 transcription factor TF Family: GRAS SCL domain class transcription factor [Theobroma cacao]
6 Hb_171810_030 0.0292918502 - - PREDICTED: oligopeptide transporter 6-like [Jatropha curcas]
7 Hb_040323_010 0.0410963993 - - -
8 Hb_011433_010 0.04178654 - - PREDICTED: (R)-mandelonitrile lyase-like [Populus euphratica]
9 Hb_001170_020 0.0422583068 - - conserved hypothetical protein [Ricinus communis]
10 Hb_099182_010 0.0445224786 - - PREDICTED: uncharacterized protein LOC101214783 [Cucumis sativus]
11 Hb_003605_170 0.044573676 - - hypothetical protein POPTR_0013s12020g [Populus trichocarpa]
12 Hb_000210_020 0.0516176487 transcription factor TF Family: OFP Ovate family protein 13, putative [Theobroma cacao]
13 Hb_003836_040 0.0519176974 - - PREDICTED: cytochrome P450 77A3-like [Jatropha curcas]
14 Hb_000297_190 0.0519399856 - - cell wall invertase [Manihot esculenta]
15 Hb_008484_080 0.0535321924 - - PREDICTED: crocetin glucosyltransferase, chloroplastic-like [Jatropha curcas]
16 Hb_003392_060 0.0539123239 - - Flavonol 4'-sulfotransferase, putative [Ricinus communis]
17 Hb_003050_380 0.0543200451 - - hypothetical protein POPTR_0007s03380g [Populus trichocarpa]
18 Hb_005797_020 0.0545308757 - - PREDICTED: BAG family molecular chaperone regulator 1-like [Jatropha curcas]
19 Hb_005888_020 0.0564918684 - - PREDICTED: uncharacterized protein LOC105127729 [Populus euphratica]
20 Hb_004724_440 0.0610384666 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_002434_040 Hb_002434_040 Hb_000053_010 Hb_000053_010 Hb_002434_040--Hb_000053_010 Hb_023313_050 Hb_023313_050 Hb_002434_040--Hb_023313_050 Hb_000977_250 Hb_000977_250 Hb_002434_040--Hb_000977_250 Hb_014361_160 Hb_014361_160 Hb_002434_040--Hb_014361_160 Hb_171810_030 Hb_171810_030 Hb_002434_040--Hb_171810_030 Hb_040323_010 Hb_040323_010 Hb_002434_040--Hb_040323_010 Hb_000053_010--Hb_023313_050 Hb_000053_010--Hb_014361_160 Hb_000053_010--Hb_000977_250 Hb_000053_010--Hb_171810_030 Hb_011433_010 Hb_011433_010 Hb_000053_010--Hb_011433_010 Hb_023313_050--Hb_000977_250 Hb_023313_050--Hb_171810_030 Hb_023313_050--Hb_014361_160 Hb_099182_010 Hb_099182_010 Hb_023313_050--Hb_099182_010 Hb_001170_020 Hb_001170_020 Hb_000977_250--Hb_001170_020 Hb_003605_170 Hb_003605_170 Hb_000977_250--Hb_003605_170 Hb_000977_250--Hb_014361_160 Hb_014361_160--Hb_171810_030 Hb_014361_160--Hb_011433_010 Hb_003392_060 Hb_003392_060 Hb_014361_160--Hb_003392_060 Hb_171810_030--Hb_040323_010 Hb_171810_030--Hb_003392_060 Hb_004724_440 Hb_004724_440 Hb_040323_010--Hb_004724_440 Hb_040323_010--Hb_099182_010 Hb_040323_010--Hb_014361_160 Hb_040323_010--Hb_023313_050 Hb_000191_090 Hb_000191_090 Hb_040323_010--Hb_000191_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 101.426 16.8908 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 101.026

CAGE analysis