Hb_171810_030

Information

Type -
Description -
Location Contig171810: 18074-20477
Sequence    

Annotation

kegg
ID pop:POPTR_0012s02660g
description POPTRDRAFT_823225; hypothetical protein
nr
ID XP_012067043.1
description PREDICTED: oligopeptide transporter 6-like [Jatropha curcas]
swissprot
ID Q9T095
description Oligopeptide transporter 6 OS=Arabidopsis thaliana GN=OPT6 PE=2 SV=1
trembl
ID A0A067LDI9
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_03016 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_16093: 18383-19019 , PASA_asmbl_16094: 19262-19440
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_171810_030 0.0 - - PREDICTED: oligopeptide transporter 6-like [Jatropha curcas]
2 Hb_014361_160 0.0161279336 transcription factor TF Family: GRAS SCL domain class transcription factor [Theobroma cacao]
3 Hb_040323_010 0.0222902829 - - -
4 Hb_002434_040 0.0292918502 - - hypothetical protein CICLE_v10022672mg [Citrus clementina]
5 Hb_003392_060 0.0300253081 - - Flavonol 4'-sulfotransferase, putative [Ricinus communis]
6 Hb_000053_010 0.0303467995 - - hypothetical protein PRUPE_ppa017696mg [Prunus persica]
7 Hb_023313_050 0.0310317419 transcription factor TF Family: Rcd1-like PREDICTED: cell differentiation protein rcd1-like [Jatropha curcas]
8 Hb_011433_010 0.0339547765 - - PREDICTED: (R)-mandelonitrile lyase-like [Populus euphratica]
9 Hb_004724_440 0.0403627305 - - conserved hypothetical protein [Ricinus communis]
10 Hb_000977_250 0.0462727838 - - Anthranilate N-benzoyltransferase protein, putative [Ricinus communis]
11 Hb_099182_010 0.0485357602 - - PREDICTED: uncharacterized protein LOC101214783 [Cucumis sativus]
12 Hb_005797_020 0.0521207701 - - PREDICTED: BAG family molecular chaperone regulator 1-like [Jatropha curcas]
13 Hb_015807_120 0.0525546648 - - PREDICTED: photosynthetic NDH subunit of lumenal location 3, chloroplastic [Jatropha curcas]
14 Hb_071557_010 0.0549665282 - - hypothetical protein POPTR_0008s06270g [Populus trichocarpa]
15 Hb_000191_090 0.0579753372 transcription factor TF Family: MYB GHMYB10, putative [Theobroma cacao]
16 Hb_000011_510 0.0590439068 - - Esterase precursor, putative [Ricinus communis]
17 Hb_003605_170 0.0591475162 - - hypothetical protein POPTR_0013s12020g [Populus trichocarpa]
18 Hb_008484_080 0.0602861251 - - PREDICTED: crocetin glucosyltransferase, chloroplastic-like [Jatropha curcas]
19 Hb_000414_040 0.0646453513 - - hypothetical protein POPTR_0009s13250g [Populus trichocarpa]
20 Hb_096267_010 0.0654089747 - - hypothetical protein POPTR_0008s06270g [Populus trichocarpa]

Gene co-expression network

sample Hb_171810_030 Hb_171810_030 Hb_014361_160 Hb_014361_160 Hb_171810_030--Hb_014361_160 Hb_040323_010 Hb_040323_010 Hb_171810_030--Hb_040323_010 Hb_002434_040 Hb_002434_040 Hb_171810_030--Hb_002434_040 Hb_003392_060 Hb_003392_060 Hb_171810_030--Hb_003392_060 Hb_000053_010 Hb_000053_010 Hb_171810_030--Hb_000053_010 Hb_023313_050 Hb_023313_050 Hb_171810_030--Hb_023313_050 Hb_011433_010 Hb_011433_010 Hb_014361_160--Hb_011433_010 Hb_014361_160--Hb_000053_010 Hb_014361_160--Hb_002434_040 Hb_014361_160--Hb_003392_060 Hb_014361_160--Hb_023313_050 Hb_004724_440 Hb_004724_440 Hb_040323_010--Hb_004724_440 Hb_099182_010 Hb_099182_010 Hb_040323_010--Hb_099182_010 Hb_040323_010--Hb_014361_160 Hb_040323_010--Hb_023313_050 Hb_000191_090 Hb_000191_090 Hb_040323_010--Hb_000191_090 Hb_002434_040--Hb_000053_010 Hb_002434_040--Hb_023313_050 Hb_000977_250 Hb_000977_250 Hb_002434_040--Hb_000977_250 Hb_002434_040--Hb_040323_010 Hb_071557_010 Hb_071557_010 Hb_003392_060--Hb_071557_010 Hb_003392_060--Hb_011433_010 Hb_015807_120 Hb_015807_120 Hb_003392_060--Hb_015807_120 Hb_000740_010 Hb_000740_010 Hb_003392_060--Hb_000740_010 Hb_000053_010--Hb_023313_050 Hb_000053_010--Hb_000977_250 Hb_000053_010--Hb_011433_010 Hb_023313_050--Hb_000977_250 Hb_023313_050--Hb_099182_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.707358 0.0922471 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0.638832

CAGE analysis