Hb_000191_090

Information

Type transcription factor
Description TF Family: MYB
Location Contig191: 96977-105046
Sequence    

Annotation

kegg
ID tcc:TCM_037555
description GHMYB10, putative
nr
ID XP_007012678.1
description GHMYB10, putative [Theobroma cacao]
swissprot
ID P10290
description Anthocyanin regulatory C1 protein OS=Zea mays GN=C1 PE=2 SV=1
trembl
ID A0A061GMC6
description GHMYB10, putative OS=Theobroma cacao GN=TCM_037555 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_19034: 97001-98033 , PASA_asmbl_19035: 102444-104529
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000191_090 0.0 transcription factor TF Family: MYB GHMYB10, putative [Theobroma cacao]
2 Hb_099182_010 0.0319452845 - - PREDICTED: uncharacterized protein LOC101214783 [Cucumis sativus]
3 Hb_040323_010 0.0407544651 - - -
4 Hb_004724_440 0.0481138235 - - conserved hypothetical protein [Ricinus communis]
5 Hb_008484_080 0.0494115808 - - PREDICTED: crocetin glucosyltransferase, chloroplastic-like [Jatropha curcas]
6 Hb_171810_030 0.0579753372 - - PREDICTED: oligopeptide transporter 6-like [Jatropha curcas]
7 Hb_023313_050 0.0583280076 transcription factor TF Family: Rcd1-like PREDICTED: cell differentiation protein rcd1-like [Jatropha curcas]
8 Hb_000003_490 0.0618777657 - - PREDICTED: uncharacterized protein LOC105631559 isoform X2 [Jatropha curcas]
9 Hb_007101_120 0.0622413099 - - PREDICTED: uncharacterized protein LOC105649846 [Jatropha curcas]
10 Hb_002434_040 0.0632652874 - - hypothetical protein CICLE_v10022672mg [Citrus clementina]
11 Hb_005245_110 0.0650688508 - - hypothetical protein CISIN_1g0225141mg [Citrus sinensis]
12 Hb_000977_250 0.0659419735 - - Anthranilate N-benzoyltransferase protein, putative [Ricinus communis]
13 Hb_000482_170 0.0659771428 transcription factor TF Family: C2C2-GATA GATA nirate-inducible carbon-metabolism involved protein [Populus nigra x Populus x canadensis]
14 Hb_000053_010 0.0684327658 - - hypothetical protein PRUPE_ppa017696mg [Prunus persica]
15 Hb_003921_010 0.069251738 - - conserved hypothetical protein [Ricinus communis]
16 Hb_096267_010 0.07090388 - - hypothetical protein POPTR_0008s06270g [Populus trichocarpa]
17 Hb_014361_160 0.0712593753 transcription factor TF Family: GRAS SCL domain class transcription factor [Theobroma cacao]
18 Hb_005618_030 0.0729686244 - - PREDICTED: cytochrome P450 734A1-like [Jatropha curcas]
19 Hb_005605_010 0.0785157745 - - hypothetical protein POPTR_0019s13220g [Populus trichocarpa]
20 Hb_000625_080 0.0798883102 - - PREDICTED: ferredoxin--NADP reductase, leaf isozyme, chloroplastic [Jatropha curcas]

Gene co-expression network

sample Hb_000191_090 Hb_000191_090 Hb_099182_010 Hb_099182_010 Hb_000191_090--Hb_099182_010 Hb_040323_010 Hb_040323_010 Hb_000191_090--Hb_040323_010 Hb_004724_440 Hb_004724_440 Hb_000191_090--Hb_004724_440 Hb_008484_080 Hb_008484_080 Hb_000191_090--Hb_008484_080 Hb_171810_030 Hb_171810_030 Hb_000191_090--Hb_171810_030 Hb_023313_050 Hb_023313_050 Hb_000191_090--Hb_023313_050 Hb_099182_010--Hb_008484_080 Hb_099182_010--Hb_040323_010 Hb_099182_010--Hb_023313_050 Hb_002434_040 Hb_002434_040 Hb_099182_010--Hb_002434_040 Hb_099182_010--Hb_171810_030 Hb_040323_010--Hb_171810_030 Hb_040323_010--Hb_004724_440 Hb_014361_160 Hb_014361_160 Hb_040323_010--Hb_014361_160 Hb_040323_010--Hb_023313_050 Hb_004724_440--Hb_171810_030 Hb_096267_010 Hb_096267_010 Hb_004724_440--Hb_096267_010 Hb_000011_510 Hb_000011_510 Hb_004724_440--Hb_000011_510 Hb_003392_060 Hb_003392_060 Hb_004724_440--Hb_003392_060 Hb_008484_080--Hb_023313_050 Hb_008484_080--Hb_040323_010 Hb_008484_080--Hb_002434_040 Hb_000977_250 Hb_000977_250 Hb_008484_080--Hb_000977_250 Hb_171810_030--Hb_014361_160 Hb_171810_030--Hb_002434_040 Hb_171810_030--Hb_003392_060 Hb_000053_010 Hb_000053_010 Hb_171810_030--Hb_000053_010 Hb_171810_030--Hb_023313_050 Hb_023313_050--Hb_002434_040 Hb_023313_050--Hb_000053_010 Hb_023313_050--Hb_000977_250 Hb_023313_050--Hb_014361_160
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0108004 3.79523 0.386817 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 4.16568

CAGE analysis