Hb_004724_440

Information

Type -
Description -
Location Contig4724: 276318-277242
Sequence    

Annotation

kegg
ID rcu:RCOM_1282260
description hypothetical protein
nr
ID XP_002523852.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID Q949Q5
description Photosystem I subunit O OS=Arabidopsis thaliana GN=PSAO PE=1 SV=1
trembl
ID B9SCY3
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1282260 PE=4 SV=1
Gene Ontology
ID GO:0005739
description photosystem i subunit o

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_44396: 276276-277313
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004724_440 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_040323_010 0.0327602389 - - -
3 Hb_171810_030 0.0403627305 - - PREDICTED: oligopeptide transporter 6-like [Jatropha curcas]
4 Hb_096267_010 0.0459949214 - - hypothetical protein POPTR_0008s06270g [Populus trichocarpa]
5 Hb_000191_090 0.0481138235 transcription factor TF Family: MYB GHMYB10, putative [Theobroma cacao]
6 Hb_000011_510 0.0495711036 - - Esterase precursor, putative [Ricinus communis]
7 Hb_003392_060 0.0504685079 - - Flavonol 4'-sulfotransferase, putative [Ricinus communis]
8 Hb_014361_160 0.052214277 transcription factor TF Family: GRAS SCL domain class transcription factor [Theobroma cacao]
9 Hb_099182_010 0.0568774549 - - PREDICTED: uncharacterized protein LOC101214783 [Cucumis sativus]
10 Hb_015807_120 0.0598776348 - - PREDICTED: photosynthetic NDH subunit of lumenal location 3, chloroplastic [Jatropha curcas]
11 Hb_023313_050 0.0601842975 transcription factor TF Family: Rcd1-like PREDICTED: cell differentiation protein rcd1-like [Jatropha curcas]
12 Hb_002434_040 0.0610384666 - - hypothetical protein CICLE_v10022672mg [Citrus clementina]
13 Hb_000053_010 0.0634844695 - - hypothetical protein PRUPE_ppa017696mg [Prunus persica]
14 Hb_071557_010 0.0635397569 - - hypothetical protein POPTR_0008s06270g [Populus trichocarpa]
15 Hb_011433_010 0.064984515 - - PREDICTED: (R)-mandelonitrile lyase-like [Populus euphratica]
16 Hb_099335_010 0.0655284239 - - PREDICTED: UDP-glycosyltransferase 76C2-like [Populus euphratica]
17 Hb_008484_080 0.0663931501 - - PREDICTED: crocetin glucosyltransferase, chloroplastic-like [Jatropha curcas]
18 Hb_000977_250 0.0668443192 - - Anthranilate N-benzoyltransferase protein, putative [Ricinus communis]
19 Hb_005618_030 0.0682435858 - - PREDICTED: cytochrome P450 734A1-like [Jatropha curcas]
20 Hb_006555_020 0.0729062528 transcription factor TF Family: NAC PREDICTED: NAC domain-containing protein 55-like [Jatropha curcas]

Gene co-expression network

sample Hb_004724_440 Hb_004724_440 Hb_040323_010 Hb_040323_010 Hb_004724_440--Hb_040323_010 Hb_171810_030 Hb_171810_030 Hb_004724_440--Hb_171810_030 Hb_096267_010 Hb_096267_010 Hb_004724_440--Hb_096267_010 Hb_000191_090 Hb_000191_090 Hb_004724_440--Hb_000191_090 Hb_000011_510 Hb_000011_510 Hb_004724_440--Hb_000011_510 Hb_003392_060 Hb_003392_060 Hb_004724_440--Hb_003392_060 Hb_040323_010--Hb_171810_030 Hb_099182_010 Hb_099182_010 Hb_040323_010--Hb_099182_010 Hb_014361_160 Hb_014361_160 Hb_040323_010--Hb_014361_160 Hb_023313_050 Hb_023313_050 Hb_040323_010--Hb_023313_050 Hb_040323_010--Hb_000191_090 Hb_171810_030--Hb_014361_160 Hb_002434_040 Hb_002434_040 Hb_171810_030--Hb_002434_040 Hb_171810_030--Hb_003392_060 Hb_000053_010 Hb_000053_010 Hb_171810_030--Hb_000053_010 Hb_171810_030--Hb_023313_050 Hb_096267_010--Hb_000011_510 Hb_006555_020 Hb_006555_020 Hb_096267_010--Hb_006555_020 Hb_099335_010 Hb_099335_010 Hb_096267_010--Hb_099335_010 Hb_015807_120 Hb_015807_120 Hb_096267_010--Hb_015807_120 Hb_071557_010 Hb_071557_010 Hb_096267_010--Hb_071557_010 Hb_000191_090--Hb_099182_010 Hb_008484_080 Hb_008484_080 Hb_000191_090--Hb_008484_080 Hb_000191_090--Hb_171810_030 Hb_000191_090--Hb_023313_050 Hb_000011_510--Hb_099335_010 Hb_048476_090 Hb_048476_090 Hb_000011_510--Hb_048476_090 Hb_000011_510--Hb_071557_010 Hb_000011_510--Hb_003392_060 Hb_000740_010 Hb_000740_010 Hb_000011_510--Hb_000740_010 Hb_003392_060--Hb_071557_010 Hb_011433_010 Hb_011433_010 Hb_003392_060--Hb_011433_010 Hb_003392_060--Hb_014361_160 Hb_003392_060--Hb_015807_120 Hb_003392_060--Hb_000740_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0531897 42.6572 4.15107 0 0.0872898
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 38.375

CAGE analysis