Hb_048476_090

Information

Type -
Description -
Location Contig48476: 61499-62397
Sequence    

Annotation

kegg
ID rcu:RCOM_0053580
description hypothetical protein
nr
ID XP_002533197.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9T4M8
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0053580 PE=4 SV=1
Gene Ontology
ID GO:0009507
description conserved hypothetical protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_44946: 61489-62516
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_048476_090 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_099335_010 0.0245508984 - - PREDICTED: UDP-glycosyltransferase 76C2-like [Populus euphratica]
3 Hb_000740_010 0.0336508323 - - cytochrome P450, putative [Ricinus communis]
4 Hb_071557_010 0.0376965916 - - hypothetical protein POPTR_0008s06270g [Populus trichocarpa]
5 Hb_000011_510 0.0399701571 - - Esterase precursor, putative [Ricinus communis]
6 Hb_001284_050 0.0438913828 - - PREDICTED: uncharacterized protein LOC100781779 isoform X1 [Glycine max]
7 Hb_006261_020 0.0472651295 - - Vacuolar cation/proton exchanger 1a, putative [Ricinus communis]
8 Hb_004235_070 0.0514105094 - - acyl carrier protein, putative [Ricinus communis]
9 Hb_003392_060 0.0589760185 - - Flavonol 4'-sulfotransferase, putative [Ricinus communis]
10 Hb_015807_120 0.0613246103 - - PREDICTED: photosynthetic NDH subunit of lumenal location 3, chloroplastic [Jatropha curcas]
11 Hb_096267_010 0.0615407517 - - hypothetical protein POPTR_0008s06270g [Populus trichocarpa]
12 Hb_002006_080 0.0646504323 - - PREDICTED: CRAL-TRIO domain-containing protein YKL091C-like isoform X2 [Citrus sinensis]
13 Hb_006555_020 0.0655780246 transcription factor TF Family: NAC PREDICTED: NAC domain-containing protein 55-like [Jatropha curcas]
14 Hb_000334_020 0.0683168789 - - PREDICTED: dynein light chain 2, cytoplasmic [Jatropha curcas]
15 Hb_001638_060 0.0687064538 - - PREDICTED: rho GTPase-activating protein 3-like isoform X1 [Populus euphratica]
16 Hb_000210_210 0.0739387003 - - PREDICTED: uncharacterized protein LOC105635822 isoform X1 [Jatropha curcas]
17 Hb_004724_440 0.0784883105 - - conserved hypothetical protein [Ricinus communis]
18 Hb_002253_020 0.0795891835 - - PREDICTED: callose synthase 5 [Jatropha curcas]
19 Hb_001033_080 0.080567067 transcription factor TF Family: C2H2 Transcriptional regulator SUPERMAN, putative [Ricinus communis]
20 Hb_000016_140 0.0806093686 - - glucose-methanol-choline (gmc) oxidoreductase, putative [Ricinus communis]

Gene co-expression network

sample Hb_048476_090 Hb_048476_090 Hb_099335_010 Hb_099335_010 Hb_048476_090--Hb_099335_010 Hb_000740_010 Hb_000740_010 Hb_048476_090--Hb_000740_010 Hb_071557_010 Hb_071557_010 Hb_048476_090--Hb_071557_010 Hb_000011_510 Hb_000011_510 Hb_048476_090--Hb_000011_510 Hb_001284_050 Hb_001284_050 Hb_048476_090--Hb_001284_050 Hb_006261_020 Hb_006261_020 Hb_048476_090--Hb_006261_020 Hb_099335_010--Hb_000011_510 Hb_099335_010--Hb_071557_010 Hb_099335_010--Hb_000740_010 Hb_096267_010 Hb_096267_010 Hb_099335_010--Hb_096267_010 Hb_003392_060 Hb_003392_060 Hb_099335_010--Hb_003392_060 Hb_000740_010--Hb_071557_010 Hb_004235_070 Hb_004235_070 Hb_000740_010--Hb_004235_070 Hb_000740_010--Hb_003392_060 Hb_015807_120 Hb_015807_120 Hb_000740_010--Hb_015807_120 Hb_071557_010--Hb_003392_060 Hb_071557_010--Hb_015807_120 Hb_071557_010--Hb_000011_510 Hb_000011_510--Hb_096267_010 Hb_000011_510--Hb_003392_060 Hb_000011_510--Hb_000740_010 Hb_000334_020 Hb_000334_020 Hb_001284_050--Hb_000334_020 Hb_000016_140 Hb_000016_140 Hb_001284_050--Hb_000016_140 Hb_001284_050--Hb_099335_010 Hb_001284_050--Hb_006261_020 Hb_001033_080 Hb_001033_080 Hb_001284_050--Hb_001033_080 Hb_006261_020--Hb_004235_070 Hb_006261_020--Hb_000740_010 Hb_001638_060 Hb_001638_060 Hb_006261_020--Hb_001638_060 Hb_006261_020--Hb_015807_120 Hb_006261_020--Hb_071557_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 61.4709 4.67026 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0838838 39.3526

CAGE analysis