Hb_001638_060

Information

Type -
Description -
Location Contig1638: 78430-82505
Sequence    

Annotation

kegg
ID pop:POPTR_0014s09940g
description POPTRDRAFT_1098697; hypothetical protein
nr
ID XP_011038985.1
description PREDICTED: rho GTPase-activating protein 3-like isoform X1 [Populus euphratica]
swissprot
ID Q8GYY5
description Rho GTPase-activating protein 3 OS=Arabidopsis thaliana GN=ROPGAP3 PE=2 SV=1
trembl
ID B9I928
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0014s09940g PE=4 SV=1
Gene Ontology
ID GO:0007165
description rho gtpase-activating protein 3-like isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_14985: 78239-82517
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001638_060 0.0 - - PREDICTED: rho GTPase-activating protein 3-like isoform X1 [Populus euphratica]
2 Hb_004235_070 0.0445913607 - - acyl carrier protein, putative [Ricinus communis]
3 Hb_015807_120 0.0460209927 - - PREDICTED: photosynthetic NDH subunit of lumenal location 3, chloroplastic [Jatropha curcas]
4 Hb_006261_020 0.0469317364 - - Vacuolar cation/proton exchanger 1a, putative [Ricinus communis]
5 Hb_000210_210 0.0532895041 - - PREDICTED: uncharacterized protein LOC105635822 isoform X1 [Jatropha curcas]
6 Hb_000821_030 0.0542389448 - - PREDICTED: putative E3 ubiquitin-protein ligase LIN-2 [Jatropha curcas]
7 Hb_000030_070 0.0565900065 - - conserved hypothetical protein [Ricinus communis]
8 Hb_000740_010 0.0586263269 - - cytochrome P450, putative [Ricinus communis]
9 Hb_071557_010 0.0593285487 - - hypothetical protein POPTR_0008s06270g [Populus trichocarpa]
10 Hb_000414_040 0.062977381 - - hypothetical protein POPTR_0009s13250g [Populus trichocarpa]
11 Hb_002078_280 0.0645123973 - - chlorophyll a/b-binding protein type II precursor [Populus trichocarpa]
12 Hb_003392_060 0.0653124121 - - Flavonol 4'-sulfotransferase, putative [Ricinus communis]
13 Hb_002006_080 0.0660999293 - - PREDICTED: CRAL-TRIO domain-containing protein YKL091C-like isoform X2 [Citrus sinensis]
14 Hb_002245_050 0.0667704117 - - Oxygen-evolving enhancer protein 3-1, chloroplast precursor, putative [Ricinus communis]
15 Hb_048476_090 0.0687064538 - - conserved hypothetical protein [Ricinus communis]
16 Hb_000836_620 0.0699610306 - - PREDICTED: protochlorophyllide reductase, chloroplastic [Jatropha curcas]
17 Hb_000979_210 0.0701701016 - - conserved hypothetical protein [Ricinus communis]
18 Hb_005797_020 0.0704327549 - - PREDICTED: BAG family molecular chaperone regulator 1-like [Jatropha curcas]
19 Hb_011433_010 0.0704340809 - - PREDICTED: (R)-mandelonitrile lyase-like [Populus euphratica]
20 Hb_000174_120 0.0706933723 - - Anthranilate N-benzoyltransferase protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_001638_060 Hb_001638_060 Hb_004235_070 Hb_004235_070 Hb_001638_060--Hb_004235_070 Hb_015807_120 Hb_015807_120 Hb_001638_060--Hb_015807_120 Hb_006261_020 Hb_006261_020 Hb_001638_060--Hb_006261_020 Hb_000210_210 Hb_000210_210 Hb_001638_060--Hb_000210_210 Hb_000821_030 Hb_000821_030 Hb_001638_060--Hb_000821_030 Hb_000030_070 Hb_000030_070 Hb_001638_060--Hb_000030_070 Hb_004235_070--Hb_006261_020 Hb_000740_010 Hb_000740_010 Hb_004235_070--Hb_000740_010 Hb_004235_070--Hb_015807_120 Hb_071557_010 Hb_071557_010 Hb_004235_070--Hb_071557_010 Hb_002006_080 Hb_002006_080 Hb_004235_070--Hb_002006_080 Hb_003392_060 Hb_003392_060 Hb_015807_120--Hb_003392_060 Hb_015807_120--Hb_071557_010 Hb_015807_120--Hb_000740_010 Hb_011433_010 Hb_011433_010 Hb_015807_120--Hb_011433_010 Hb_006261_020--Hb_000740_010 Hb_048476_090 Hb_048476_090 Hb_006261_020--Hb_048476_090 Hb_006261_020--Hb_015807_120 Hb_006261_020--Hb_071557_010 Hb_000979_210 Hb_000979_210 Hb_000210_210--Hb_000979_210 Hb_000210_210--Hb_004235_070 Hb_000210_210--Hb_006261_020 Hb_000210_210--Hb_002006_080 Hb_000836_620 Hb_000836_620 Hb_000210_210--Hb_000836_620 Hb_000262_090 Hb_000262_090 Hb_000821_030--Hb_000262_090 Hb_008013_020 Hb_008013_020 Hb_000821_030--Hb_008013_020 Hb_000210_030 Hb_000210_030 Hb_000821_030--Hb_000210_030 Hb_006573_110 Hb_006573_110 Hb_000821_030--Hb_006573_110 Hb_002245_050 Hb_002245_050 Hb_000821_030--Hb_002245_050 Hb_000174_120 Hb_000174_120 Hb_000821_030--Hb_000174_120 Hb_003683_170 Hb_003683_170 Hb_000030_070--Hb_003683_170 Hb_005618_030 Hb_005618_030 Hb_000030_070--Hb_005618_030 Hb_001377_080 Hb_001377_080 Hb_000030_070--Hb_001377_080 Hb_006555_020 Hb_006555_020 Hb_000030_070--Hb_006555_020 Hb_001287_020 Hb_001287_020 Hb_000030_070--Hb_001287_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0722544 14.0671 1.79103 0.0132405 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.0236786 0 0.0377899 9.22603

CAGE analysis