Hb_001377_080

Information

Type -
Description -
Location Contig1377: 62724-66118
Sequence    

Annotation

kegg
ID rcu:RCOM_0719290
description triacylglycerol lipase, putative
nr
ID XP_012083231.1
description PREDICTED: uncharacterized protein LOC105642864 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067JX90
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_14273 PE=4 SV=1
Gene Ontology
ID GO:0006629
description alpha beta-hydrolases superfamily protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_10374: 63019-64338 , PASA_asmbl_10375: 64926-65383
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001377_080 0.0 - - PREDICTED: uncharacterized protein LOC105642864 [Jatropha curcas]
2 Hb_000030_070 0.0561826447 - - conserved hypothetical protein [Ricinus communis]
3 Hb_006555_020 0.0629641315 transcription factor TF Family: NAC PREDICTED: NAC domain-containing protein 55-like [Jatropha curcas]
4 Hb_003683_170 0.0641703048 - - conserved hypothetical protein [Ricinus communis]
5 Hb_005618_030 0.0715689322 - - PREDICTED: cytochrome P450 734A1-like [Jatropha curcas]
6 Hb_096267_010 0.0802320799 - - hypothetical protein POPTR_0008s06270g [Populus trichocarpa]
7 Hb_001287_020 0.0820257222 - - SulA [Manihot esculenta]
8 Hb_001638_060 0.0859450344 - - PREDICTED: rho GTPase-activating protein 3-like isoform X1 [Populus euphratica]
9 Hb_006261_020 0.085999818 - - Vacuolar cation/proton exchanger 1a, putative [Ricinus communis]
10 Hb_015807_120 0.0915346961 - - PREDICTED: photosynthetic NDH subunit of lumenal location 3, chloroplastic [Jatropha curcas]
11 Hb_000011_510 0.0925959558 - - Esterase precursor, putative [Ricinus communis]
12 Hb_048476_090 0.0927092887 - - conserved hypothetical protein [Ricinus communis]
13 Hb_004724_440 0.0928182436 - - conserved hypothetical protein [Ricinus communis]
14 Hb_004235_070 0.0957108983 - - acyl carrier protein, putative [Ricinus communis]
15 Hb_000188_010 0.0961691887 - - PREDICTED: cytochrome P450 94C1-like [Jatropha curcas]
16 Hb_099335_010 0.0965510681 - - PREDICTED: UDP-glycosyltransferase 76C2-like [Populus euphratica]
17 Hb_003392_060 0.098240996 - - Flavonol 4'-sulfotransferase, putative [Ricinus communis]
18 Hb_071557_010 0.0984710948 - - hypothetical protein POPTR_0008s06270g [Populus trichocarpa]
19 Hb_000821_030 0.100020224 - - PREDICTED: putative E3 ubiquitin-protein ligase LIN-2 [Jatropha curcas]
20 Hb_040323_010 0.1009408992 - - -

Gene co-expression network

sample Hb_001377_080 Hb_001377_080 Hb_000030_070 Hb_000030_070 Hb_001377_080--Hb_000030_070 Hb_006555_020 Hb_006555_020 Hb_001377_080--Hb_006555_020 Hb_003683_170 Hb_003683_170 Hb_001377_080--Hb_003683_170 Hb_005618_030 Hb_005618_030 Hb_001377_080--Hb_005618_030 Hb_096267_010 Hb_096267_010 Hb_001377_080--Hb_096267_010 Hb_001287_020 Hb_001287_020 Hb_001377_080--Hb_001287_020 Hb_000030_070--Hb_003683_170 Hb_000030_070--Hb_005618_030 Hb_001638_060 Hb_001638_060 Hb_000030_070--Hb_001638_060 Hb_000030_070--Hb_006555_020 Hb_000030_070--Hb_001287_020 Hb_006555_020--Hb_096267_010 Hb_006555_020--Hb_005618_030 Hb_000011_510 Hb_000011_510 Hb_006555_020--Hb_000011_510 Hb_048476_090 Hb_048476_090 Hb_006555_020--Hb_048476_090 Hb_003683_170--Hb_001287_020 Hb_003683_170--Hb_005618_030 Hb_003683_170--Hb_006555_020 Hb_003683_170--Hb_001638_060 Hb_008013_020 Hb_008013_020 Hb_005618_030--Hb_008013_020 Hb_005618_030--Hb_096267_010 Hb_000937_010 Hb_000937_010 Hb_005618_030--Hb_000937_010 Hb_096267_010--Hb_000011_510 Hb_004724_440 Hb_004724_440 Hb_096267_010--Hb_004724_440 Hb_099335_010 Hb_099335_010 Hb_096267_010--Hb_099335_010 Hb_015807_120 Hb_015807_120 Hb_096267_010--Hb_015807_120 Hb_071557_010 Hb_071557_010 Hb_096267_010--Hb_071557_010 Hb_001287_020--Hb_005618_030 Hb_000080_070 Hb_000080_070 Hb_001287_020--Hb_000080_070 Hb_000510_180 Hb_000510_180 Hb_001287_020--Hb_000510_180
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0556726 6.97719 0.594506 0.0270676 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0219003 0 0 0.116516 5.50334

CAGE analysis