Hb_005618_030

Information

Type -
Description -
Location Contig5618: 20977-37038
Sequence    

Annotation

kegg
ID rcu:RCOM_1342740
description cytochrome P450, putative (EC:1.3.3.9)
nr
ID XP_012083025.1
description PREDICTED: cytochrome P450 734A1-like [Jatropha curcas]
swissprot
ID B9X287
description Cytochrome P450 734A6 OS=Oryza sativa subsp. japonica GN=CYP734A6 PE=2 SV=1
trembl
ID A0A0D3GTZ4
description Uncharacterized protein OS=Oryza barthii PE=4 SV=1
Gene Ontology
ID GO:0005506
description cytochrome p450 734a1-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_48817: 26143-29847 , PASA_asmbl_48818: 26117-29938
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005618_030 0.0 - - PREDICTED: cytochrome P450 734A1-like [Jatropha curcas]
2 Hb_000030_070 0.0484210455 - - conserved hypothetical protein [Ricinus communis]
3 Hb_008013_020 0.0542353408 - - PREDICTED: chlorophyll a-b binding protein CP26, chloroplastic [Jatropha curcas]
4 Hb_003683_170 0.0617781677 - - conserved hypothetical protein [Ricinus communis]
5 Hb_006555_020 0.0625253409 transcription factor TF Family: NAC PREDICTED: NAC domain-containing protein 55-like [Jatropha curcas]
6 Hb_096267_010 0.0629947959 - - hypothetical protein POPTR_0008s06270g [Populus trichocarpa]
7 Hb_000937_010 0.0632141292 - - conserved hypothetical protein [Ricinus communis]
8 Hb_003921_020 0.0648309859 - - hypothetical protein JCGZ_10628 [Jatropha curcas]
9 Hb_000625_080 0.0655722349 - - PREDICTED: ferredoxin--NADP reductase, leaf isozyme, chloroplastic [Jatropha curcas]
10 Hb_006573_110 0.0668496803 - - PREDICTED: uncharacterized protein PAM68-like [Jatropha curcas]
11 Hb_004724_440 0.0682435858 - - conserved hypothetical protein [Ricinus communis]
12 Hb_000821_030 0.0709309018 - - PREDICTED: putative E3 ubiquitin-protein ligase LIN-2 [Jatropha curcas]
13 Hb_015807_120 0.0709543391 - - PREDICTED: photosynthetic NDH subunit of lumenal location 3, chloroplastic [Jatropha curcas]
14 Hb_001377_080 0.0715689322 - - PREDICTED: uncharacterized protein LOC105642864 [Jatropha curcas]
15 Hb_001287_020 0.0727588284 - - SulA [Manihot esculenta]
16 Hb_000191_090 0.0729686244 transcription factor TF Family: MYB GHMYB10, putative [Theobroma cacao]
17 Hb_007101_120 0.073224418 - - PREDICTED: uncharacterized protein LOC105649846 [Jatropha curcas]
18 Hb_171810_030 0.0747650404 - - PREDICTED: oligopeptide transporter 6-like [Jatropha curcas]
19 Hb_040323_010 0.0747852368 - - -
20 Hb_000977_250 0.0788651982 - - Anthranilate N-benzoyltransferase protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_005618_030 Hb_005618_030 Hb_000030_070 Hb_000030_070 Hb_005618_030--Hb_000030_070 Hb_008013_020 Hb_008013_020 Hb_005618_030--Hb_008013_020 Hb_003683_170 Hb_003683_170 Hb_005618_030--Hb_003683_170 Hb_006555_020 Hb_006555_020 Hb_005618_030--Hb_006555_020 Hb_096267_010 Hb_096267_010 Hb_005618_030--Hb_096267_010 Hb_000937_010 Hb_000937_010 Hb_005618_030--Hb_000937_010 Hb_000030_070--Hb_003683_170 Hb_001377_080 Hb_001377_080 Hb_000030_070--Hb_001377_080 Hb_001638_060 Hb_001638_060 Hb_000030_070--Hb_001638_060 Hb_000030_070--Hb_006555_020 Hb_001287_020 Hb_001287_020 Hb_000030_070--Hb_001287_020 Hb_006573_110 Hb_006573_110 Hb_008013_020--Hb_006573_110 Hb_003921_020 Hb_003921_020 Hb_008013_020--Hb_003921_020 Hb_000262_090 Hb_000262_090 Hb_008013_020--Hb_000262_090 Hb_000821_030 Hb_000821_030 Hb_008013_020--Hb_000821_030 Hb_002818_110 Hb_002818_110 Hb_008013_020--Hb_002818_110 Hb_000210_030 Hb_000210_030 Hb_008013_020--Hb_000210_030 Hb_003683_170--Hb_001287_020 Hb_003683_170--Hb_001377_080 Hb_003683_170--Hb_006555_020 Hb_003683_170--Hb_001638_060 Hb_006555_020--Hb_096267_010 Hb_006555_020--Hb_001377_080 Hb_000011_510 Hb_000011_510 Hb_006555_020--Hb_000011_510 Hb_048476_090 Hb_048476_090 Hb_006555_020--Hb_048476_090 Hb_096267_010--Hb_000011_510 Hb_004724_440 Hb_004724_440 Hb_096267_010--Hb_004724_440 Hb_099335_010 Hb_099335_010 Hb_096267_010--Hb_099335_010 Hb_015807_120 Hb_015807_120 Hb_096267_010--Hb_015807_120 Hb_071557_010 Hb_071557_010 Hb_096267_010--Hb_071557_010 Hb_000115_020 Hb_000115_020 Hb_000937_010--Hb_000115_020 Hb_000625_080 Hb_000625_080 Hb_000937_010--Hb_000625_080 Hb_000937_010--Hb_008013_020 Hb_000937_010--Hb_006573_110 Hb_007101_120 Hb_007101_120 Hb_000937_010--Hb_007101_120
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.00618413 5.05965 293.6 33.6695 0.0417169 0.0394038
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.210321 0.154474 0.021118 0.93636 265.257

CAGE analysis