Hb_003921_020

Information

Type -
Description -
Location Contig3921: 56273-57912
Sequence    

Annotation

kegg
ID pop:POPTR_0003s08840g
description hypothetical protein
nr
ID KDP35819.1
description hypothetical protein JCGZ_10628 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067KVE5
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_10628 PE=4 SV=1
Gene Ontology
ID GO:0009507
description tld protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_39314: 56348-57800
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003921_020 0.0 - - hypothetical protein JCGZ_10628 [Jatropha curcas]
2 Hb_008013_020 0.0375782353 - - PREDICTED: chlorophyll a-b binding protein CP26, chloroplastic [Jatropha curcas]
3 Hb_006573_110 0.0413607769 - - PREDICTED: uncharacterized protein PAM68-like [Jatropha curcas]
4 Hb_000281_120 0.0585618311 - - protein binding protein, putative [Ricinus communis]
5 Hb_000262_090 0.0603703344 - - Root phototropism protein, putative [Ricinus communis]
6 Hb_000821_030 0.0613132796 - - PREDICTED: putative E3 ubiquitin-protein ligase LIN-2 [Jatropha curcas]
7 Hb_003651_030 0.0645072465 - - lyase, putative [Ricinus communis]
8 Hb_000210_030 0.0645676566 transcription factor TF Family: OFP PREDICTED: transcription repressor OFP6 [Jatropha curcas]
9 Hb_005618_030 0.0648309859 - - PREDICTED: cytochrome P450 734A1-like [Jatropha curcas]
10 Hb_002805_200 0.0652369831 - - PREDICTED: serine--glyoxylate aminotransferase [Nelumbo nucifera]
11 Hb_002818_110 0.0691594241 transcription factor TF Family: bHLH hypothetical protein RCOM_1343120 [Ricinus communis]
12 Hb_000030_070 0.0703675633 - - conserved hypothetical protein [Ricinus communis]
13 Hb_003573_030 0.0714056499 - - PREDICTED: alkane hydroxylase MAH1-like [Jatropha curcas]
14 Hb_000061_010 0.0733316222 - - conserved hypothetical protein [Ricinus communis]
15 Hb_000510_180 0.0772705253 - - unknown [Lotus japonicus]
16 Hb_002078_280 0.0773707164 - - chlorophyll a/b-binding protein type II precursor [Populus trichocarpa]
17 Hb_001233_050 0.0775626408 - - Magnesium-protoporphyrin IX monomethyl ester [oxidative] cyclase, chloroplast precursor, putative [Ricinus communis]
18 Hb_000937_010 0.0792498094 - - conserved hypothetical protein [Ricinus communis]
19 Hb_002245_050 0.0801188098 - - Oxygen-evolving enhancer protein 3-1, chloroplast precursor, putative [Ricinus communis]
20 Hb_000625_080 0.0811868492 - - PREDICTED: ferredoxin--NADP reductase, leaf isozyme, chloroplastic [Jatropha curcas]

Gene co-expression network

sample Hb_003921_020 Hb_003921_020 Hb_008013_020 Hb_008013_020 Hb_003921_020--Hb_008013_020 Hb_006573_110 Hb_006573_110 Hb_003921_020--Hb_006573_110 Hb_000281_120 Hb_000281_120 Hb_003921_020--Hb_000281_120 Hb_000262_090 Hb_000262_090 Hb_003921_020--Hb_000262_090 Hb_000821_030 Hb_000821_030 Hb_003921_020--Hb_000821_030 Hb_003651_030 Hb_003651_030 Hb_003921_020--Hb_003651_030 Hb_008013_020--Hb_006573_110 Hb_008013_020--Hb_000262_090 Hb_008013_020--Hb_000821_030 Hb_002818_110 Hb_002818_110 Hb_008013_020--Hb_002818_110 Hb_000210_030 Hb_000210_030 Hb_008013_020--Hb_000210_030 Hb_006573_110--Hb_002818_110 Hb_006573_110--Hb_000262_090 Hb_006573_110--Hb_000210_030 Hb_006573_110--Hb_000821_030 Hb_000281_120--Hb_003651_030 Hb_003573_030 Hb_003573_030 Hb_000281_120--Hb_003573_030 Hb_002805_200 Hb_002805_200 Hb_000281_120--Hb_002805_200 Hb_000281_120--Hb_000210_030 Hb_000340_280 Hb_000340_280 Hb_000281_120--Hb_000340_280 Hb_000262_090--Hb_000821_030 Hb_000262_090--Hb_000210_030 Hb_000018_110 Hb_000018_110 Hb_000262_090--Hb_000018_110 Hb_000262_090--Hb_002818_110 Hb_000821_030--Hb_000210_030 Hb_002245_050 Hb_002245_050 Hb_000821_030--Hb_002245_050 Hb_000174_120 Hb_000174_120 Hb_000821_030--Hb_000174_120 Hb_003651_030--Hb_003573_030 Hb_003651_030--Hb_002805_200 Hb_003651_030--Hb_000210_030 Hb_003651_030--Hb_000340_280 Hb_000359_050 Hb_000359_050 Hb_003651_030--Hb_000359_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.971143 29.807 4.89122 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0475938 0.0374341 0 0 24.2848

CAGE analysis