Hb_000340_280

Information

Type -
Description -
Location Contig340: 232191-233442
Sequence    

Annotation

kegg
ID rcu:RCOM_0647740
description hypothetical protein
nr
ID XP_002524796.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9SFM7
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0647740 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_35551: 232216-233250
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000340_280 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_000359_050 0.0462563184 - - Oxygen-evolving enhancer protein 2, chloroplast precursor, putative [Ricinus communis]
3 Hb_002805_200 0.0508088511 - - PREDICTED: serine--glyoxylate aminotransferase [Nelumbo nucifera]
4 Hb_101133_030 0.0518990447 - - DUF26 domain-containing protein 1 precursor, putative [Ricinus communis]
5 Hb_003651_030 0.0554271718 - - lyase, putative [Ricinus communis]
6 Hb_000281_120 0.0569507834 - - protein binding protein, putative [Ricinus communis]
7 Hb_001006_150 0.0591547076 transcription factor TF Family: C2H2 zinc finger protein, putative [Ricinus communis]
8 Hb_000749_140 0.0615930058 - - PREDICTED: 2-succinylbenzoate--CoA ligase, chloroplastic/peroxisomal [Jatropha curcas]
9 Hb_078954_030 0.0630333143 - - conserved hypothetical protein [Ricinus communis]
10 Hb_001014_240 0.0698650222 - - PREDICTED: protein NRT1/ PTR FAMILY 6.1 [Jatropha curcas]
11 Hb_001864_050 0.0716007062 - - chloroplast oxygen-evolving enhancer protein [Manihot esculenta]
12 Hb_001233_050 0.0735304385 - - Magnesium-protoporphyrin IX monomethyl ester [oxidative] cyclase, chloroplast precursor, putative [Ricinus communis]
13 Hb_001424_010 0.0765485634 - - serine/threonine protein kinase, putative [Ricinus communis]
14 Hb_000962_090 0.0773441901 - - omega-6 fatty acid desaturase [Hevea brasiliensis]
15 Hb_001916_110 0.0774297334 - - PREDICTED: uncharacterized protein LOC105641510 [Jatropha curcas]
16 Hb_005211_080 0.0803259056 - - hypothetical protein POPTR_0010s13740g [Populus trichocarpa]
17 Hb_000445_270 0.0813351721 - - ATP binding protein, putative [Ricinus communis]
18 Hb_003573_030 0.0830181257 - - PREDICTED: alkane hydroxylase MAH1-like [Jatropha curcas]
19 Hb_000530_040 0.0840071556 transcription factor TF Family: HB PREDICTED: homeobox-leucine zipper protein HDG2 isoform X1 [Jatropha curcas]
20 Hb_001338_120 0.0840225678 - - hypothetical chloroplast RF68 (chloroplast) [Ipomoea batatas]

Gene co-expression network

sample Hb_000340_280 Hb_000340_280 Hb_000359_050 Hb_000359_050 Hb_000340_280--Hb_000359_050 Hb_002805_200 Hb_002805_200 Hb_000340_280--Hb_002805_200 Hb_101133_030 Hb_101133_030 Hb_000340_280--Hb_101133_030 Hb_003651_030 Hb_003651_030 Hb_000340_280--Hb_003651_030 Hb_000281_120 Hb_000281_120 Hb_000340_280--Hb_000281_120 Hb_001006_150 Hb_001006_150 Hb_000340_280--Hb_001006_150 Hb_000359_050--Hb_001006_150 Hb_000962_090 Hb_000962_090 Hb_000359_050--Hb_000962_090 Hb_005211_080 Hb_005211_080 Hb_000359_050--Hb_005211_080 Hb_001014_240 Hb_001014_240 Hb_000359_050--Hb_001014_240 Hb_000359_050--Hb_003651_030 Hb_002805_200--Hb_000281_120 Hb_002805_200--Hb_003651_030 Hb_001864_050 Hb_001864_050 Hb_002805_200--Hb_001864_050 Hb_078954_030 Hb_078954_030 Hb_002805_200--Hb_078954_030 Hb_001233_050 Hb_001233_050 Hb_002805_200--Hb_001233_050 Hb_000749_140 Hb_000749_140 Hb_101133_030--Hb_000749_140 Hb_101133_030--Hb_001014_240 Hb_101133_030--Hb_000359_050 Hb_101133_030--Hb_001233_050 Hb_101133_030--Hb_003651_030 Hb_003651_030--Hb_000281_120 Hb_003573_030 Hb_003573_030 Hb_003651_030--Hb_003573_030 Hb_000210_030 Hb_000210_030 Hb_003651_030--Hb_000210_030 Hb_000281_120--Hb_003573_030 Hb_000281_120--Hb_000210_030 Hb_003921_020 Hb_003921_020 Hb_000281_120--Hb_003921_020 Hb_001006_150--Hb_005211_080 Hb_000445_270 Hb_000445_270 Hb_001006_150--Hb_000445_270 Hb_001766_160 Hb_001766_160 Hb_001006_150--Hb_001766_160 Hb_001338_120 Hb_001338_120 Hb_001006_150--Hb_001338_120
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 2.22409 31.2591 5.99225 0 0.0257718
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.158545 0 0 0.552044 25.6154

CAGE analysis