Hb_001006_150

Information

Type transcription factor
Description TF Family: C2H2
Location Contig1006: 189060-192211
Sequence    

Annotation

kegg
ID rcu:RCOM_0775730
description zinc finger protein, putative
nr
ID XP_002521877.1
description zinc finger protein, putative [Ricinus communis]
swissprot
ID Q8GYC1
description Protein indeterminate-domain 4, chloroplastic OS=Arabidopsis thaliana GN=IDD4 PE=1 SV=1
trembl
ID B9S7A8
description Zinc finger protein, putative OS=Ricinus communis GN=RCOM_0775730 PE=4 SV=1
Gene Ontology
ID GO:0003676
description indeterminate -domain isoform 2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_00396: 188721-192406 , PASA_asmbl_00397: 190630-190853
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001006_150 0.0 transcription factor TF Family: C2H2 zinc finger protein, putative [Ricinus communis]
2 Hb_000359_050 0.0452540954 - - Oxygen-evolving enhancer protein 2, chloroplast precursor, putative [Ricinus communis]
3 Hb_005211_080 0.0506419226 - - hypothetical protein POPTR_0010s13740g [Populus trichocarpa]
4 Hb_000445_270 0.0535697898 - - ATP binding protein, putative [Ricinus communis]
5 Hb_001766_160 0.058204373 - - Serine/threonine-protein kinase SAPK1 [Gossypium arboreum]
6 Hb_000340_280 0.0591547076 - - conserved hypothetical protein [Ricinus communis]
7 Hb_001338_120 0.0611173471 - - hypothetical chloroplast RF68 (chloroplast) [Ipomoea batatas]
8 Hb_005329_010 0.0615367626 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase At1g11410 [Jatropha curcas]
9 Hb_004712_220 0.0620015054 - - conserved hypothetical protein [Ricinus communis]
10 Hb_005649_060 0.0631212202 - - PREDICTED: uncharacterized protein LOC105644161 [Jatropha curcas]
11 Hb_000281_120 0.0636706353 - - protein binding protein, putative [Ricinus communis]
12 Hb_003651_030 0.0647158056 - - lyase, putative [Ricinus communis]
13 Hb_001864_050 0.0649324689 - - chloroplast oxygen-evolving enhancer protein [Manihot esculenta]
14 Hb_000088_230 0.067183778 - - hypothetical protein POPTR_0013s11340g [Populus trichocarpa]
15 Hb_000962_090 0.0703314052 - - omega-6 fatty acid desaturase [Hevea brasiliensis]
16 Hb_013726_060 0.0714874613 transcription factor TF Family: HB PREDICTED: homeobox-leucine zipper protein ANTHOCYANINLESS 2 [Jatropha curcas]
17 Hb_001322_120 0.0757896607 - - nutrient reservoir, putative [Ricinus communis]
18 Hb_078954_030 0.076606117 - - conserved hypothetical protein [Ricinus communis]
19 Hb_001343_030 0.0767791472 - - PREDICTED: NAD(P)H-quinone oxidoreductase subunit N, chloroplastic [Jatropha curcas]
20 Hb_002529_120 0.0771915567 - - PREDICTED: cyclin-dependent kinase inhibitor 7-like [Jatropha curcas]

Gene co-expression network

sample Hb_001006_150 Hb_001006_150 Hb_000359_050 Hb_000359_050 Hb_001006_150--Hb_000359_050 Hb_005211_080 Hb_005211_080 Hb_001006_150--Hb_005211_080 Hb_000445_270 Hb_000445_270 Hb_001006_150--Hb_000445_270 Hb_001766_160 Hb_001766_160 Hb_001006_150--Hb_001766_160 Hb_000340_280 Hb_000340_280 Hb_001006_150--Hb_000340_280 Hb_001338_120 Hb_001338_120 Hb_001006_150--Hb_001338_120 Hb_000962_090 Hb_000962_090 Hb_000359_050--Hb_000962_090 Hb_000359_050--Hb_000340_280 Hb_000359_050--Hb_005211_080 Hb_001014_240 Hb_001014_240 Hb_000359_050--Hb_001014_240 Hb_003651_030 Hb_003651_030 Hb_000359_050--Hb_003651_030 Hb_005211_080--Hb_000962_090 Hb_005329_010 Hb_005329_010 Hb_005211_080--Hb_005329_010 Hb_004306_090 Hb_004306_090 Hb_005211_080--Hb_004306_090 Hb_005211_080--Hb_001766_160 Hb_080922_010 Hb_080922_010 Hb_000445_270--Hb_080922_010 Hb_005649_060 Hb_005649_060 Hb_000445_270--Hb_005649_060 Hb_000445_270--Hb_000359_050 Hb_000445_270--Hb_005329_010 Hb_001864_050 Hb_001864_050 Hb_000445_270--Hb_001864_050 Hb_001322_120 Hb_001322_120 Hb_001766_160--Hb_001322_120 Hb_001766_160--Hb_005649_060 Hb_007477_060 Hb_007477_060 Hb_001766_160--Hb_007477_060 Hb_000531_100 Hb_000531_100 Hb_001766_160--Hb_000531_100 Hb_002871_180 Hb_002871_180 Hb_001766_160--Hb_002871_180 Hb_002805_200 Hb_002805_200 Hb_000340_280--Hb_002805_200 Hb_101133_030 Hb_101133_030 Hb_000340_280--Hb_101133_030 Hb_000340_280--Hb_003651_030 Hb_000281_120 Hb_000281_120 Hb_000340_280--Hb_000281_120 Hb_001338_120--Hb_001864_050 Hb_001338_120--Hb_005329_010 Hb_001338_120--Hb_000359_050 Hb_001338_120--Hb_000281_120 Hb_001338_120--Hb_000445_270
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 2.43838 26.6257 5.96751 0.0232736 0.0236206
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.109311 0.0215008 0 0.317071 28.3768

CAGE analysis