Hb_000962_090

Information

Type -
Description -
Location Contig962: 164782-169138
Sequence    

Annotation

kegg
ID rcu:RCOM_0503360
description omega-6 desaturase, endoplasmic reticulum (EC:1.14.99.33)
nr
ID AAY87459.1
description omega-6 fatty acid desaturase [Hevea brasiliensis]
swissprot
ID P48631
description Omega-6 fatty acid desaturase, endoplasmic reticulum isozyme 2 OS=Glycine max GN=FAD2-2 PE=2 SV=1
trembl
ID Q461Q1
description Omega-6 fatty acid desaturase OS=Hevea brasiliensis GN=FAD PE=2 SV=1
Gene Ontology
ID GO:0016717
description omega-6 fatty acid endoplasmic reticulum isozyme 2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_63759: 164706-169096 , PASA_asmbl_63760: 164706-166792 , PASA_asmbl_63761: 167394-167763
cDNA
(Sanger)
(ID:Location)		 025_O14.ab1: 165451-169092 , 035_I06.ab1: 165424-169092 , 042_G16.ab1: 165517-169092

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000962_090 0.0 - - omega-6 fatty acid desaturase [Hevea brasiliensis]
2 Hb_005211_080 0.0443611449 - - hypothetical protein POPTR_0010s13740g [Populus trichocarpa]
3 Hb_000359_050 0.0458143798 - - Oxygen-evolving enhancer protein 2, chloroplast precursor, putative [Ricinus communis]
4 Hb_001343_030 0.052305627 - - PREDICTED: NAD(P)H-quinone oxidoreductase subunit N, chloroplastic [Jatropha curcas]
5 Hb_001014_240 0.0567644589 - - PREDICTED: protein NRT1/ PTR FAMILY 6.1 [Jatropha curcas]
6 Hb_005329_010 0.0698126553 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase At1g11410 [Jatropha curcas]
7 Hb_001006_150 0.0703314052 transcription factor TF Family: C2H2 zinc finger protein, putative [Ricinus communis]
8 Hb_001424_010 0.0709271945 - - serine/threonine protein kinase, putative [Ricinus communis]
9 Hb_001975_120 0.0718862818 - - chlorophyll a/b binding protein type II [Glycine max]
10 Hb_001159_050 0.0722099783 - - PREDICTED: uncharacterized protein LOC105645952 [Jatropha curcas]
11 Hb_000340_280 0.0773441901 - - conserved hypothetical protein [Ricinus communis]
12 Hb_000530_040 0.0781018919 transcription factor TF Family: HB PREDICTED: homeobox-leucine zipper protein HDG2 isoform X1 [Jatropha curcas]
13 Hb_001338_120 0.0791158053 - - hypothetical chloroplast RF68 (chloroplast) [Ipomoea batatas]
14 Hb_078954_030 0.0796372233 - - conserved hypothetical protein [Ricinus communis]
15 Hb_005000_110 0.0798920969 - - PREDICTED: uncharacterized protein LOC105637872 isoform X1 [Jatropha curcas]
16 Hb_000155_020 0.0814974859 - - PREDICTED: triose phosphate/phosphate translocator TPT, chloroplastic isoform X1 [Jatropha curcas]
17 Hb_007597_030 0.0816870591 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
18 Hb_003937_010 0.0817974641 - - hypothetical protein JCGZ_20930 [Jatropha curcas]
19 Hb_015044_010 0.0822870461 - - hypothetical protein JCGZ_25130 [Jatropha curcas]
20 Hb_002272_210 0.083301038 - - PREDICTED: UPF0603 protein At1g54780, chloroplastic [Jatropha curcas]

Gene co-expression network

sample Hb_000962_090 Hb_000962_090 Hb_005211_080 Hb_005211_080 Hb_000962_090--Hb_005211_080 Hb_000359_050 Hb_000359_050 Hb_000962_090--Hb_000359_050 Hb_001343_030 Hb_001343_030 Hb_000962_090--Hb_001343_030 Hb_001014_240 Hb_001014_240 Hb_000962_090--Hb_001014_240 Hb_005329_010 Hb_005329_010 Hb_000962_090--Hb_005329_010 Hb_001006_150 Hb_001006_150 Hb_000962_090--Hb_001006_150 Hb_005211_080--Hb_000359_050 Hb_005211_080--Hb_001006_150 Hb_005211_080--Hb_005329_010 Hb_004306_090 Hb_004306_090 Hb_005211_080--Hb_004306_090 Hb_001766_160 Hb_001766_160 Hb_005211_080--Hb_001766_160 Hb_000359_050--Hb_001006_150 Hb_000340_280 Hb_000340_280 Hb_000359_050--Hb_000340_280 Hb_000359_050--Hb_001014_240 Hb_003651_030 Hb_003651_030 Hb_000359_050--Hb_003651_030 Hb_001975_120 Hb_001975_120 Hb_001343_030--Hb_001975_120 Hb_002272_210 Hb_002272_210 Hb_001343_030--Hb_002272_210 Hb_000530_040 Hb_000530_040 Hb_001343_030--Hb_000530_040 Hb_001343_030--Hb_005211_080 Hb_001343_030--Hb_000359_050 Hb_015044_010 Hb_015044_010 Hb_001014_240--Hb_015044_010 Hb_000128_040 Hb_000128_040 Hb_001014_240--Hb_000128_040 Hb_101133_030 Hb_101133_030 Hb_001014_240--Hb_101133_030 Hb_001014_240--Hb_000340_280 Hb_005329_010--Hb_001766_160 Hb_000088_230 Hb_000088_230 Hb_005329_010--Hb_000088_230 Hb_005329_010--Hb_001006_150 Hb_001322_120 Hb_001322_120 Hb_005329_010--Hb_001322_120 Hb_000460_040 Hb_000460_040 Hb_005329_010--Hb_000460_040 Hb_000445_270 Hb_000445_270 Hb_001006_150--Hb_000445_270 Hb_001006_150--Hb_001766_160 Hb_001006_150--Hb_000340_280 Hb_001338_120 Hb_001338_120 Hb_001006_150--Hb_001338_120
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.708277 19.0514 200.263 62.6552 0.394483 0.262736
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.672322 0.352618 0.141845 5.16913 191.31

CAGE analysis