Hb_001014_240

Information

Type -
Description -
Location Contig1014: 181034-184071
Sequence    

Annotation

kegg
ID pop:POPTR_0001s12890g
description POPTRDRAFT_839267; hypothetical protein
nr
ID XP_012088699.1
description PREDICTED: protein NRT1/ PTR FAMILY 6.1 [Jatropha curcas]
swissprot
ID Q9LYR6
description Protein NRT1/ PTR FAMILY 6.1 OS=Arabidopsis thaliana GN=NPF6.1 PE=2 SV=1
trembl
ID A0A067JH71
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_23084 PE=3 SV=1
Gene Ontology
ID GO:0016021
description protein nrt1 ptr family

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_00721: 181095-184341 , PASA_asmbl_00722: 181117-184341
cDNA
(Sanger)
(ID:Location)		 032_K20.ab1: 181186-181386

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001014_240 0.0 - - PREDICTED: protein NRT1/ PTR FAMILY 6.1 [Jatropha curcas]
2 Hb_015044_010 0.0380119545 - - hypothetical protein JCGZ_25130 [Jatropha curcas]
3 Hb_000359_050 0.0502948954 - - Oxygen-evolving enhancer protein 2, chloroplast precursor, putative [Ricinus communis]
4 Hb_000962_090 0.0567644589 - - omega-6 fatty acid desaturase [Hevea brasiliensis]
5 Hb_000128_040 0.0577392256 - - PREDICTED: uncharacterized protein LOC105641228 isoform X1 [Jatropha curcas]
6 Hb_101133_030 0.0632180512 - - DUF26 domain-containing protein 1 precursor, putative [Ricinus communis]
7 Hb_000340_280 0.0698650222 - - conserved hypothetical protein [Ricinus communis]
8 Hb_001975_120 0.0727084519 - - chlorophyll a/b binding protein type II [Glycine max]
9 Hb_003937_010 0.0749371531 - - hypothetical protein JCGZ_20930 [Jatropha curcas]
10 Hb_001343_030 0.0762619476 - - PREDICTED: NAD(P)H-quinone oxidoreductase subunit N, chloroplastic [Jatropha curcas]
11 Hb_006267_040 0.0785232619 - - PREDICTED: ABC transporter G family member 32 isoform X1 [Jatropha curcas]
12 Hb_005211_080 0.0788375642 - - hypothetical protein POPTR_0010s13740g [Populus trichocarpa]
13 Hb_003651_030 0.0805208898 - - lyase, putative [Ricinus communis]
14 Hb_009476_030 0.0820814959 - - fatty acid desaturase [Manihot esculenta]
15 Hb_001424_010 0.0823856177 - - serine/threonine protein kinase, putative [Ricinus communis]
16 Hb_000749_140 0.0848553213 - - PREDICTED: 2-succinylbenzoate--CoA ligase, chloroplastic/peroxisomal [Jatropha curcas]
17 Hb_000530_040 0.0854753833 transcription factor TF Family: HB PREDICTED: homeobox-leucine zipper protein HDG2 isoform X1 [Jatropha curcas]
18 Hb_000281_120 0.0869357241 - - protein binding protein, putative [Ricinus communis]
19 Hb_092516_010 0.0870187179 - - hypothetical protein JCGZ_12248 [Jatropha curcas]
20 Hb_001266_010 0.0878207722 - - PREDICTED: uncharacterized protein LOC101206474 [Cucumis sativus]

Gene co-expression network

sample Hb_001014_240 Hb_001014_240 Hb_015044_010 Hb_015044_010 Hb_001014_240--Hb_015044_010 Hb_000359_050 Hb_000359_050 Hb_001014_240--Hb_000359_050 Hb_000962_090 Hb_000962_090 Hb_001014_240--Hb_000962_090 Hb_000128_040 Hb_000128_040 Hb_001014_240--Hb_000128_040 Hb_101133_030 Hb_101133_030 Hb_001014_240--Hb_101133_030 Hb_000340_280 Hb_000340_280 Hb_001014_240--Hb_000340_280 Hb_006267_040 Hb_006267_040 Hb_015044_010--Hb_006267_040 Hb_015044_010--Hb_000128_040 Hb_015044_010--Hb_101133_030 Hb_000866_060 Hb_000866_060 Hb_015044_010--Hb_000866_060 Hb_003937_010 Hb_003937_010 Hb_015044_010--Hb_003937_010 Hb_001006_150 Hb_001006_150 Hb_000359_050--Hb_001006_150 Hb_000359_050--Hb_000962_090 Hb_000359_050--Hb_000340_280 Hb_005211_080 Hb_005211_080 Hb_000359_050--Hb_005211_080 Hb_003651_030 Hb_003651_030 Hb_000359_050--Hb_003651_030 Hb_000962_090--Hb_005211_080 Hb_001343_030 Hb_001343_030 Hb_000962_090--Hb_001343_030 Hb_005329_010 Hb_005329_010 Hb_000962_090--Hb_005329_010 Hb_000962_090--Hb_001006_150 Hb_000128_040--Hb_101133_030 Hb_000128_040--Hb_000359_050 Hb_023344_090 Hb_023344_090 Hb_000128_040--Hb_023344_090 Hb_000128_040--Hb_006267_040 Hb_101133_030--Hb_000340_280 Hb_000749_140 Hb_000749_140 Hb_101133_030--Hb_000749_140 Hb_101133_030--Hb_000359_050 Hb_001233_050 Hb_001233_050 Hb_101133_030--Hb_001233_050 Hb_101133_030--Hb_003651_030 Hb_002805_200 Hb_002805_200 Hb_000340_280--Hb_002805_200 Hb_000340_280--Hb_003651_030 Hb_000281_120 Hb_000281_120 Hb_000340_280--Hb_000281_120 Hb_000340_280--Hb_001006_150
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0152468 2.64445 41.3701 11.6357 0 0.0138201
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0173003 0.0544539 0 1.60534 35.2606

CAGE analysis