Hb_006267_040

Information

Type -
Description -
Location Contig6267: 76368-87390
Sequence    

Annotation

kegg
ID pop:POPTR_0018s06370g
description POPTRDRAFT_825829; ABC transporter family protein
nr
ID XP_012078686.1
description PREDICTED: ABC transporter G family member 32 isoform X1 [Jatropha curcas]
swissprot
ID O81016
description ABC transporter G family member 32 OS=Arabidopsis thaliana GN=ABCG32 PE=1 SV=1
trembl
ID B9ILH5
description ABC transporter family protein OS=Populus trichocarpa GN=POPTR_0018s06370g PE=4 SV=2
Gene Ontology
ID GO:0005886
description abc transporter g family member 32

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_51677: 76576-87446 , PASA_asmbl_51678: 85330-85660 , PASA_asmbl_51679: 79454-79919 , PASA_asmbl_51680: 80222-80354
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_006267_040 0.0 - - PREDICTED: ABC transporter G family member 32 isoform X1 [Jatropha curcas]
2 Hb_015044_010 0.056475076 - - hypothetical protein JCGZ_25130 [Jatropha curcas]
3 Hb_000866_060 0.0617079022 - - putative glycerol-3-phosphate acyltransferase [Vernicia fordii]
4 Hb_001014_240 0.0785232619 - - PREDICTED: protein NRT1/ PTR FAMILY 6.1 [Jatropha curcas]
5 Hb_000300_110 0.0795178586 - - hypothetical protein JCGZ_02651 [Jatropha curcas]
6 Hb_000128_040 0.0803842351 - - PREDICTED: uncharacterized protein LOC105641228 isoform X1 [Jatropha curcas]
7 Hb_174899_010 0.0879929085 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At4g36180 [Jatropha curcas]
8 Hb_127263_010 0.0923031237 - - hypothetical protein JCGZ_02828 [Jatropha curcas]
9 Hb_001374_050 0.0932813014 - - PREDICTED: subtilisin-like protease SBT5.3 [Jatropha curcas]
10 Hb_007545_070 0.098237182 transcription factor TF Family: MYB PREDICTED: myb-related protein 306 [Populus euphratica]
11 Hb_003043_130 0.1025645968 transcription factor TF Family: ERF PREDICTED: ethylene-responsive transcription factor CRF2-like [Jatropha curcas]
12 Hb_009476_030 0.1026082556 - - fatty acid desaturase [Manihot esculenta]
13 Hb_101133_030 0.1029239393 - - DUF26 domain-containing protein 1 precursor, putative [Ricinus communis]
14 Hb_000239_050 0.1031722698 - - PREDICTED: cyclin-D5-1-like [Jatropha curcas]
15 Hb_005460_040 0.1033360117 - - PREDICTED: long chain acyl-CoA synthetase 2 [Jatropha curcas]
16 Hb_003750_110 0.1041692911 - - PREDICTED: aldose 1-epimerase-like [Jatropha curcas]
17 Hb_001942_060 0.1042241122 - - conserved hypothetical protein [Ricinus communis]
18 Hb_023344_090 0.1059498829 - - Photosystem II reaction center W protein, putative [Ricinus communis]
19 Hb_124677_010 0.1076895754 - - conserved hypothetical protein [Ricinus communis]
20 Hb_004553_050 0.1086551389 - - PREDICTED: probable inactive receptor kinase At5g10020 [Jatropha curcas]

Gene co-expression network

sample Hb_006267_040 Hb_006267_040 Hb_015044_010 Hb_015044_010 Hb_006267_040--Hb_015044_010 Hb_000866_060 Hb_000866_060 Hb_006267_040--Hb_000866_060 Hb_001014_240 Hb_001014_240 Hb_006267_040--Hb_001014_240 Hb_000300_110 Hb_000300_110 Hb_006267_040--Hb_000300_110 Hb_000128_040 Hb_000128_040 Hb_006267_040--Hb_000128_040 Hb_174899_010 Hb_174899_010 Hb_006267_040--Hb_174899_010 Hb_015044_010--Hb_001014_240 Hb_015044_010--Hb_000128_040 Hb_101133_030 Hb_101133_030 Hb_015044_010--Hb_101133_030 Hb_015044_010--Hb_000866_060 Hb_003937_010 Hb_003937_010 Hb_015044_010--Hb_003937_010 Hb_127263_010 Hb_127263_010 Hb_000866_060--Hb_127263_010 Hb_000239_050 Hb_000239_050 Hb_000866_060--Hb_000239_050 Hb_001409_080 Hb_001409_080 Hb_000866_060--Hb_001409_080 Hb_000866_060--Hb_000300_110 Hb_000359_050 Hb_000359_050 Hb_001014_240--Hb_000359_050 Hb_000962_090 Hb_000962_090 Hb_001014_240--Hb_000962_090 Hb_001014_240--Hb_000128_040 Hb_001014_240--Hb_101133_030 Hb_000340_280 Hb_000340_280 Hb_001014_240--Hb_000340_280 Hb_000300_110--Hb_127263_010 Hb_000300_110--Hb_000239_050 Hb_029920_010 Hb_029920_010 Hb_000300_110--Hb_029920_010 Hb_007545_070 Hb_007545_070 Hb_000300_110--Hb_007545_070 Hb_000152_350 Hb_000152_350 Hb_000300_110--Hb_000152_350 Hb_000128_040--Hb_101133_030 Hb_000128_040--Hb_000359_050 Hb_023344_090 Hb_023344_090 Hb_000128_040--Hb_023344_090 Hb_174899_010--Hb_007545_070 Hb_021443_060 Hb_021443_060 Hb_174899_010--Hb_021443_060 Hb_003101_020 Hb_003101_020 Hb_174899_010--Hb_003101_020 Hb_002391_030 Hb_002391_030 Hb_174899_010--Hb_002391_030 Hb_000722_030 Hb_000722_030 Hb_174899_010--Hb_000722_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.627451 26.9495 8.03884 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.00869623 0.0136877 0 1.98532 20.1292

CAGE analysis