Hb_007545_070

Information

Type transcription factor
Description TF Family: MYB
Location Contig7545: 33510-34999
Sequence    

Annotation

kegg
ID rcu:RCOM_0845210
description r2r3-myb transcription factor, putative
nr
ID XP_011047044.1
description PREDICTED: myb-related protein 306 [Populus euphratica]
swissprot
ID P81392
description Myb-related protein 306 OS=Antirrhinum majus GN=MYB306 PE=2 SV=1
trembl
ID B9SY81
description R2r3-myb transcription factor, putative OS=Ricinus communis GN=RCOM_0845210 PE=4 SV=1
Gene Ontology
ID GO:0003677
description myb-related protein 306

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_56984: 33513-35220
cDNA
(Sanger)
(ID:Location)		 010_I24.ab1: 33513-34546 , 019_B19.ab1: 33507-34545 , 033_G07.ab1: 33652-34787

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_007545_070 0.0 transcription factor TF Family: MYB PREDICTED: myb-related protein 306 [Populus euphratica]
2 Hb_006618_110 0.058837546 - - -
3 Hb_000300_110 0.0733477929 - - hypothetical protein JCGZ_02651 [Jatropha curcas]
4 Hb_005892_050 0.0749672025 - - PREDICTED: uncharacterized protein LOC105632175 [Jatropha curcas]
5 Hb_000239_050 0.0750462739 - - PREDICTED: cyclin-D5-1-like [Jatropha curcas]
6 Hb_002835_310 0.0760555576 - - ATP binding protein, putative [Ricinus communis]
7 Hb_000424_130 0.0781895293 - - PREDICTED: monoacylglycerol lipase abhd6-B-like [Jatropha curcas]
8 Hb_002391_030 0.078571539 - - hypothetical protein CISIN_1g020187mg [Citrus sinensis]
9 Hb_174899_010 0.0833553946 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At4g36180 [Jatropha curcas]
10 Hb_000722_030 0.0869512913 - - putative plant disease resistance family protein [Populus trichocarpa]
11 Hb_005535_070 0.0889210852 - - conserved hypothetical protein [Ricinus communis]
12 Hb_001266_010 0.0896801942 - - PREDICTED: uncharacterized protein LOC101206474 [Cucumis sativus]
13 Hb_015044_010 0.0899827326 - - hypothetical protein JCGZ_25130 [Jatropha curcas]
14 Hb_000152_350 0.0911371985 - - PREDICTED: enolase [Jatropha curcas]
15 Hb_011013_040 0.0913708652 transcription factor TF Family: C2C2-YABBY unknown [Populus trichocarpa]
16 Hb_127263_010 0.0934861606 - - hypothetical protein JCGZ_02828 [Jatropha curcas]
17 Hb_003937_010 0.0936708631 - - hypothetical protein JCGZ_20930 [Jatropha curcas]
18 Hb_023582_010 0.0936743185 - - conserved hypothetical protein [Ricinus communis]
19 Hb_003043_130 0.0958395001 transcription factor TF Family: ERF PREDICTED: ethylene-responsive transcription factor CRF2-like [Jatropha curcas]
20 Hb_006267_040 0.098237182 - - PREDICTED: ABC transporter G family member 32 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_007545_070 Hb_007545_070 Hb_006618_110 Hb_006618_110 Hb_007545_070--Hb_006618_110 Hb_000300_110 Hb_000300_110 Hb_007545_070--Hb_000300_110 Hb_005892_050 Hb_005892_050 Hb_007545_070--Hb_005892_050 Hb_000239_050 Hb_000239_050 Hb_007545_070--Hb_000239_050 Hb_002835_310 Hb_002835_310 Hb_007545_070--Hb_002835_310 Hb_000424_130 Hb_000424_130 Hb_007545_070--Hb_000424_130 Hb_003937_010 Hb_003937_010 Hb_006618_110--Hb_003937_010 Hb_006618_110--Hb_005892_050 Hb_000486_020 Hb_000486_020 Hb_006618_110--Hb_000486_020 Hb_011013_040 Hb_011013_040 Hb_006618_110--Hb_011013_040 Hb_010136_010 Hb_010136_010 Hb_006618_110--Hb_010136_010 Hb_127263_010 Hb_127263_010 Hb_000300_110--Hb_127263_010 Hb_000300_110--Hb_000239_050 Hb_029920_010 Hb_029920_010 Hb_000300_110--Hb_029920_010 Hb_000866_060 Hb_000866_060 Hb_000300_110--Hb_000866_060 Hb_000152_350 Hb_000152_350 Hb_000300_110--Hb_000152_350 Hb_000759_040 Hb_000759_040 Hb_005892_050--Hb_000759_040 Hb_004602_010 Hb_004602_010 Hb_005892_050--Hb_004602_010 Hb_004218_140 Hb_004218_140 Hb_005892_050--Hb_004218_140 Hb_003101_020 Hb_003101_020 Hb_005892_050--Hb_003101_020 Hb_000239_050--Hb_127263_010 Hb_000239_050--Hb_000866_060 Hb_000041_210 Hb_000041_210 Hb_000239_050--Hb_000041_210 Hb_000239_050--Hb_000424_130 Hb_000156_110 Hb_000156_110 Hb_002835_310--Hb_000156_110 Hb_002391_030 Hb_002391_030 Hb_002835_310--Hb_002391_030 Hb_002835_310--Hb_000424_130 Hb_001516_010 Hb_001516_010 Hb_002835_310--Hb_001516_010 Hb_003938_230 Hb_003938_230 Hb_002835_310--Hb_003938_230 Hb_000424_130--Hb_000152_350 Hb_000424_130--Hb_000300_110 Hb_000424_130--Hb_029920_010 Hb_000424_130--Hb_127263_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 4.34243 51.622 24.1511 0 0.0166017
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.0339428 0 4.47787 40.2019

CAGE analysis