Hb_005892_050

Information

Type -
Description -
Location Contig5892: 53085-57789
Sequence    

Annotation

kegg
ID rcu:RCOM_1168100
description hypothetical protein
nr
ID XP_012069887.1
description PREDICTED: uncharacterized protein LOC105632175 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID B9SS42
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1168100 PE=4 SV=1
Gene Ontology
ID GO:0009860
description PREDICTED: uncharacterized protein LOC105632175

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_50128: 53741-54372
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005892_050 0.0 - - PREDICTED: uncharacterized protein LOC105632175 [Jatropha curcas]
2 Hb_000759_040 0.0505949641 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase At1g34300 [Jatropha curcas]
3 Hb_006618_110 0.0710922603 - - -
4 Hb_004602_010 0.073235435 - - PREDICTED: uncharacterized protein LOC105042236 isoform X2 [Elaeis guineensis]
5 Hb_007545_070 0.0749672025 transcription factor TF Family: MYB PREDICTED: myb-related protein 306 [Populus euphratica]
6 Hb_004218_140 0.0843501525 - - PREDICTED: probable ADP-ribosylation factor GTPase-activating protein AGD11 isoform X3 [Jatropha curcas]
7 Hb_003101_020 0.0869904799 transcription factor TF Family: NAC PREDICTED: NAC transcription factor NAM-B2 [Jatropha curcas]
8 Hb_000486_020 0.0921141609 - - PREDICTED: L-type lectin-domain containing receptor kinase VIII.2 [Jatropha curcas]
9 Hb_001488_420 0.0930935882 - - PREDICTED: ABC transporter B family member 27 [Jatropha curcas]
10 Hb_002518_040 0.095110326 - - PREDICTED: probable serine/threonine-protein kinase At5g41260 [Jatropha curcas]
11 Hb_002835_310 0.0973982609 - - ATP binding protein, putative [Ricinus communis]
12 Hb_000023_130 0.099804416 - - Metal-nicotianamine transporter YSL1 [Glycine soja]
13 Hb_005535_070 0.1025780878 - - conserved hypothetical protein [Ricinus communis]
14 Hb_121313_010 0.1027016513 - - PREDICTED: endoglucanase 24-like [Jatropha curcas]
15 Hb_000302_360 0.1033800036 - - beta-carotene hydroxylase, putative [Ricinus communis]
16 Hb_003043_130 0.1037186158 transcription factor TF Family: ERF PREDICTED: ethylene-responsive transcription factor CRF2-like [Jatropha curcas]
17 Hb_002391_030 0.1040776515 - - hypothetical protein CISIN_1g020187mg [Citrus sinensis]
18 Hb_001606_010 0.104754035 - - kinase, putative [Ricinus communis]
19 Hb_000722_030 0.1052162081 - - putative plant disease resistance family protein [Populus trichocarpa]
20 Hb_007313_030 0.1052619852 - - PREDICTED: receptor-like cytosolic serine/threonine-protein kinase RBK2 [Jatropha curcas]

Gene co-expression network

sample Hb_005892_050 Hb_005892_050 Hb_000759_040 Hb_000759_040 Hb_005892_050--Hb_000759_040 Hb_006618_110 Hb_006618_110 Hb_005892_050--Hb_006618_110 Hb_004602_010 Hb_004602_010 Hb_005892_050--Hb_004602_010 Hb_007545_070 Hb_007545_070 Hb_005892_050--Hb_007545_070 Hb_004218_140 Hb_004218_140 Hb_005892_050--Hb_004218_140 Hb_003101_020 Hb_003101_020 Hb_005892_050--Hb_003101_020 Hb_000759_040--Hb_004602_010 Hb_000023_130 Hb_000023_130 Hb_000759_040--Hb_000023_130 Hb_004855_080 Hb_004855_080 Hb_000759_040--Hb_004855_080 Hb_001488_420 Hb_001488_420 Hb_000759_040--Hb_001488_420 Hb_000759_040--Hb_006618_110 Hb_006618_110--Hb_007545_070 Hb_003937_010 Hb_003937_010 Hb_006618_110--Hb_003937_010 Hb_000486_020 Hb_000486_020 Hb_006618_110--Hb_000486_020 Hb_011013_040 Hb_011013_040 Hb_006618_110--Hb_011013_040 Hb_010136_010 Hb_010136_010 Hb_006618_110--Hb_010136_010 Hb_004602_010--Hb_004218_140 Hb_000008_150 Hb_000008_150 Hb_004602_010--Hb_000008_150 Hb_004602_010--Hb_001488_420 Hb_008304_010 Hb_008304_010 Hb_004602_010--Hb_008304_010 Hb_000300_110 Hb_000300_110 Hb_007545_070--Hb_000300_110 Hb_000239_050 Hb_000239_050 Hb_007545_070--Hb_000239_050 Hb_002835_310 Hb_002835_310 Hb_007545_070--Hb_002835_310 Hb_000424_130 Hb_000424_130 Hb_007545_070--Hb_000424_130 Hb_004218_140--Hb_001488_420 Hb_121313_010 Hb_121313_010 Hb_004218_140--Hb_121313_010 Hb_004218_140--Hb_008304_010 Hb_000627_040 Hb_000627_040 Hb_004218_140--Hb_000627_040 Hb_001439_050 Hb_001439_050 Hb_003101_020--Hb_001439_050 Hb_108576_020 Hb_108576_020 Hb_003101_020--Hb_108576_020 Hb_062807_010 Hb_062807_010 Hb_003101_020--Hb_062807_010 Hb_002518_040 Hb_002518_040 Hb_003101_020--Hb_002518_040 Hb_002066_100 Hb_002066_100 Hb_003101_020--Hb_002066_100 Hb_000722_030 Hb_000722_030 Hb_003101_020--Hb_000722_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.232652 1.68907 0.829217 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.204156 1.05391

CAGE analysis