Hb_006618_110

Information

Type -
Description -
Location Contig6618: 93712-95553
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_53067: 94676-95664
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_006618_110 0.0 - - -
2 Hb_007545_070 0.058837546 transcription factor TF Family: MYB PREDICTED: myb-related protein 306 [Populus euphratica]
3 Hb_003937_010 0.062275541 - - hypothetical protein JCGZ_20930 [Jatropha curcas]
4 Hb_005892_050 0.0710922603 - - PREDICTED: uncharacterized protein LOC105632175 [Jatropha curcas]
5 Hb_000486_020 0.076638835 - - PREDICTED: L-type lectin-domain containing receptor kinase VIII.2 [Jatropha curcas]
6 Hb_011013_040 0.0812686222 transcription factor TF Family: C2C2-YABBY unknown [Populus trichocarpa]
7 Hb_010136_010 0.0855707631 - - Putative receptor-like protein kinase [Glycine soja]
8 Hb_000759_040 0.0859033975 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase At1g34300 [Jatropha curcas]
9 Hb_000155_020 0.0867741959 - - PREDICTED: triose phosphate/phosphate translocator TPT, chloroplastic isoform X1 [Jatropha curcas]
10 Hb_132356_010 0.0887298842 - - receptor serine/threonine kinase, putative [Ricinus communis]
11 Hb_063405_010 0.0918435238 - - PREDICTED: probable terpene synthase 3 [Jatropha curcas]
12 Hb_000236_130 0.0919235831 - - PREDICTED: protein ECERIFERUM 26 [Jatropha curcas]
13 Hb_000023_130 0.093576549 - - Metal-nicotianamine transporter YSL1 [Glycine soja]
14 Hb_003777_090 0.0937867681 transcription factor TF Family: Trihelix PREDICTED: trihelix transcription factor GT-2-like [Jatropha curcas]
15 Hb_004994_030 0.0940422485 transcription factor TF Family: HB PREDICTED: homeobox-leucine zipper protein ANTHOCYANINLESS 2 [Jatropha curcas]
16 Hb_001606_010 0.0959410196 - - kinase, putative [Ricinus communis]
17 Hb_000890_170 0.0990857654 - - PREDICTED: acyl-CoA-binding domain-containing protein 5 [Jatropha curcas]
18 Hb_010534_040 0.0992271376 - - PREDICTED: uncharacterized protein LOC105644385 isoform X1 [Jatropha curcas]
19 Hb_015044_010 0.0998768805 - - hypothetical protein JCGZ_25130 [Jatropha curcas]
20 Hb_001266_010 0.1012983648 - - PREDICTED: uncharacterized protein LOC101206474 [Cucumis sativus]

Gene co-expression network

sample Hb_006618_110 Hb_006618_110 Hb_007545_070 Hb_007545_070 Hb_006618_110--Hb_007545_070 Hb_003937_010 Hb_003937_010 Hb_006618_110--Hb_003937_010 Hb_005892_050 Hb_005892_050 Hb_006618_110--Hb_005892_050 Hb_000486_020 Hb_000486_020 Hb_006618_110--Hb_000486_020 Hb_011013_040 Hb_011013_040 Hb_006618_110--Hb_011013_040 Hb_010136_010 Hb_010136_010 Hb_006618_110--Hb_010136_010 Hb_000300_110 Hb_000300_110 Hb_007545_070--Hb_000300_110 Hb_007545_070--Hb_005892_050 Hb_000239_050 Hb_000239_050 Hb_007545_070--Hb_000239_050 Hb_002835_310 Hb_002835_310 Hb_007545_070--Hb_002835_310 Hb_000424_130 Hb_000424_130 Hb_007545_070--Hb_000424_130 Hb_004994_030 Hb_004994_030 Hb_003937_010--Hb_004994_030 Hb_063405_010 Hb_063405_010 Hb_003937_010--Hb_063405_010 Hb_000155_020 Hb_000155_020 Hb_003937_010--Hb_000155_020 Hb_001014_240 Hb_001014_240 Hb_003937_010--Hb_001014_240 Hb_003777_090 Hb_003777_090 Hb_003937_010--Hb_003777_090 Hb_000759_040 Hb_000759_040 Hb_005892_050--Hb_000759_040 Hb_004602_010 Hb_004602_010 Hb_005892_050--Hb_004602_010 Hb_004218_140 Hb_004218_140 Hb_005892_050--Hb_004218_140 Hb_003101_020 Hb_003101_020 Hb_005892_050--Hb_003101_020 Hb_010534_040 Hb_010534_040 Hb_000486_020--Hb_010534_040 Hb_001606_010 Hb_001606_010 Hb_000486_020--Hb_001606_010 Hb_010584_020 Hb_010584_020 Hb_000486_020--Hb_010584_020 Hb_000486_020--Hb_010136_010 Hb_001926_070 Hb_001926_070 Hb_000486_020--Hb_001926_070 Hb_012395_090 Hb_012395_090 Hb_011013_040--Hb_012395_090 Hb_011013_040--Hb_000155_020 Hb_001266_010 Hb_001266_010 Hb_011013_040--Hb_001266_010 Hb_002702_010 Hb_002702_010 Hb_011013_040--Hb_002702_010 Hb_001159_050 Hb_001159_050 Hb_011013_040--Hb_001159_050 Hb_003038_230 Hb_003038_230 Hb_011013_040--Hb_003038_230 Hb_003435_030 Hb_003435_030 Hb_010136_010--Hb_003435_030 Hb_010136_010--Hb_000155_020 Hb_010136_010--Hb_011013_040 Hb_001115_070 Hb_001115_070 Hb_010136_010--Hb_001115_070 Hb_004017_030 Hb_004017_030 Hb_010136_010--Hb_004017_030 Hb_010136_010--Hb_012395_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 1.01927 6.82572 2.84266 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.532998 5.35756

CAGE analysis