Hb_001606_010

Information

Type -
Description -
Location Contig1606: 7151-18836
Sequence    

Annotation

kegg
ID rcu:RCOM_1617430
description kinase, putative (EC:2.7.11.25)
nr
ID XP_002511965.1
description kinase, putative [Ricinus communis]
swissprot
ID Q7X8C5
description Wall-associated receptor kinase-like 2 OS=Arabidopsis thaliana GN=WAKL2 PE=2 SV=1
trembl
ID B9RE26
description Kinase, putative OS=Ricinus communis GN=RCOM_1617430 PE=4 SV=1
Gene Ontology
ID GO:0005622
description wall-associated receptor kinase-like 22

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_14370: 7864-17668 , PASA_asmbl_14372: 17272-17540 , PASA_asmbl_14373: 7054-19071
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001606_010 0.0 - - kinase, putative [Ricinus communis]
2 Hb_001926_070 0.0404068422 - - hypothetical protein JCGZ_21510 [Jatropha curcas]
3 Hb_000890_170 0.0802038176 - - PREDICTED: acyl-CoA-binding domain-containing protein 5 [Jatropha curcas]
4 Hb_001352_030 0.0812297125 - - PREDICTED: uncharacterized protein LOC105636310 [Jatropha curcas]
5 Hb_000486_020 0.0825767131 - - PREDICTED: L-type lectin-domain containing receptor kinase VIII.2 [Jatropha curcas]
6 Hb_032731_010 0.0850931485 - - RING-H2 finger protein ATL5M precursor, putative [Ricinus communis]
7 Hb_003531_050 0.0853844166 - - PREDICTED: pyridoxal reductase, chloroplastic [Jatropha curcas]
8 Hb_111997_010 0.0867070332 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase RLK1 [Vitis vinifera]
9 Hb_000007_330 0.0871337561 - - PREDICTED: probable E3 ubiquitin-protein ligase RHA2B [Jatropha curcas]
10 Hb_010534_040 0.0877211209 - - PREDICTED: uncharacterized protein LOC105644385 isoform X1 [Jatropha curcas]
11 Hb_001301_260 0.0883242664 - - PREDICTED: 1-acyl-sn-glycerol-3-phosphate acyltransferase-like isoform X1 [Jatropha curcas]
12 Hb_000302_360 0.0889688367 - - beta-carotene hydroxylase, putative [Ricinus communis]
13 Hb_001677_170 0.0955817458 - - hypothetical protein M569_03661, partial [Genlisea aurea]
14 Hb_006618_110 0.0959410196 - - -
15 Hb_000265_170 0.0961320249 desease resistance Gene Name: NB-ARC PREDICTED: disease resistance protein RPM1-like isoform X1 [Populus euphratica]
16 Hb_010136_010 0.0969707749 - - Putative receptor-like protein kinase [Glycine soja]
17 Hb_003643_050 0.0974558104 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At3g47570 [Fragaria vesca subsp. vesca]
18 Hb_003873_020 0.1005702389 - - PREDICTED: root phototropism protein 2 [Jatropha curcas]
19 Hb_003777_120 0.1008951632 - - -
20 Hb_132356_010 0.1021725685 - - receptor serine/threonine kinase, putative [Ricinus communis]

Gene co-expression network

sample Hb_001606_010 Hb_001606_010 Hb_001926_070 Hb_001926_070 Hb_001606_010--Hb_001926_070 Hb_000890_170 Hb_000890_170 Hb_001606_010--Hb_000890_170 Hb_001352_030 Hb_001352_030 Hb_001606_010--Hb_001352_030 Hb_000486_020 Hb_000486_020 Hb_001606_010--Hb_000486_020 Hb_032731_010 Hb_032731_010 Hb_001606_010--Hb_032731_010 Hb_003531_050 Hb_003531_050 Hb_001606_010--Hb_003531_050 Hb_000007_330 Hb_000007_330 Hb_001926_070--Hb_000007_330 Hb_001926_070--Hb_032731_010 Hb_001677_170 Hb_001677_170 Hb_001926_070--Hb_001677_170 Hb_001926_070--Hb_000890_170 Hb_010136_010 Hb_010136_010 Hb_001926_070--Hb_010136_010 Hb_000236_130 Hb_000236_130 Hb_000890_170--Hb_000236_130 Hb_000313_250 Hb_000313_250 Hb_000890_170--Hb_000313_250 Hb_000890_170--Hb_000007_330 Hb_000294_020 Hb_000294_020 Hb_000890_170--Hb_000294_020 Hb_001352_030--Hb_003531_050 Hb_000265_170 Hb_000265_170 Hb_001352_030--Hb_000265_170 Hb_010534_040 Hb_010534_040 Hb_001352_030--Hb_010534_040 Hb_005486_020 Hb_005486_020 Hb_001352_030--Hb_005486_020 Hb_002890_160 Hb_002890_160 Hb_001352_030--Hb_002890_160 Hb_006618_110 Hb_006618_110 Hb_000486_020--Hb_006618_110 Hb_000486_020--Hb_010534_040 Hb_010584_020 Hb_010584_020 Hb_000486_020--Hb_010584_020 Hb_000486_020--Hb_010136_010 Hb_000486_020--Hb_001926_070 Hb_059318_010 Hb_059318_010 Hb_032731_010--Hb_059318_010 Hb_074966_010 Hb_074966_010 Hb_032731_010--Hb_074966_010 Hb_001926_020 Hb_001926_020 Hb_032731_010--Hb_001926_020 Hb_003777_120 Hb_003777_120 Hb_032731_010--Hb_003777_120 Hb_001301_260 Hb_001301_260 Hb_003531_050--Hb_001301_260 Hb_003531_050--Hb_002890_160 Hb_003531_050--Hb_000265_170 Hb_000302_360 Hb_000302_360 Hb_003531_050--Hb_000302_360
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 14.221 51.4749 23.8002 0 0.00843541
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0402877 0.0158503 0.120544 3.08707 33.123

CAGE analysis