Hb_001352_030

Information

Type -
Description -
Location Contig1352: 58690-60913
Sequence    

Annotation

kegg
ID pop:POPTR_0006s08720g
description POPTRDRAFT_819173; hypothetical protein
nr
ID XP_012074958.1
description PREDICTED: uncharacterized protein LOC105636310 [Jatropha curcas]
swissprot
ID Q09893
description Uncharacterized protein C24B11.05 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAC24B11.05 PE=3 SV=1
trembl
ID A0A067KHP2
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_09085 PE=4 SV=1
Gene Ontology
ID GO:0016787
description ripening-related protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_09869: 58706-60910 , PASA_asmbl_09870: 59025-59301 , PASA_asmbl_09871: 58786-58933
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001352_030 0.0 - - PREDICTED: uncharacterized protein LOC105636310 [Jatropha curcas]
2 Hb_003531_050 0.06173567 - - PREDICTED: pyridoxal reductase, chloroplastic [Jatropha curcas]
3 Hb_000265_170 0.0787462765 desease resistance Gene Name: NB-ARC PREDICTED: disease resistance protein RPM1-like isoform X1 [Populus euphratica]
4 Hb_001606_010 0.0812297125 - - kinase, putative [Ricinus communis]
5 Hb_010534_040 0.0822030516 - - PREDICTED: uncharacterized protein LOC105644385 isoform X1 [Jatropha curcas]
6 Hb_005486_020 0.0845307831 transcription factor TF Family: HB PREDICTED: homeobox-leucine zipper protein HAT5 [Jatropha curcas]
7 Hb_002890_160 0.0903158485 - - PREDICTED: protein root UVB sensitive 6 isoform X1 [Jatropha curcas]
8 Hb_001301_260 0.0931415169 - - PREDICTED: 1-acyl-sn-glycerol-3-phosphate acyltransferase-like isoform X1 [Jatropha curcas]
9 Hb_111997_010 0.0942192944 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase RLK1 [Vitis vinifera]
10 Hb_000185_170 0.0995833443 - - ATP binding protein, putative [Ricinus communis]
11 Hb_001629_120 0.1033971626 desease resistance Gene Name: NB-ARC PREDICTED: probable disease resistance protein At4g27220 isoform X2 [Populus euphratica]
12 Hb_001926_070 0.1055327227 - - hypothetical protein JCGZ_21510 [Jatropha curcas]
13 Hb_000173_270 0.1073312509 - - PREDICTED: mitogen-activated protein kinase 15 isoform X2 [Jatropha curcas]
14 Hb_044653_050 0.1075538007 - - PREDICTED: CTL-like protein DDB_G0274487 isoform X1 [Jatropha curcas]
15 Hb_006478_050 0.1077507059 - - PREDICTED: serine/threonine-protein kinase HT1 isoform X1 [Jatropha curcas]
16 Hb_000486_020 0.1079784124 - - PREDICTED: L-type lectin-domain containing receptor kinase VIII.2 [Jatropha curcas]
17 Hb_000243_290 0.1083098302 - - plastidic aldolase family protein [Populus trichocarpa]
18 Hb_006188_020 0.1105664062 - - PREDICTED: uncharacterized protein LOC105646403 [Jatropha curcas]
19 Hb_132356_010 0.1106515068 - - receptor serine/threonine kinase, putative [Ricinus communis]
20 Hb_003337_020 0.1117998167 - - PREDICTED: uncharacterized protein LOC105116455 [Populus euphratica]

Gene co-expression network

sample Hb_001352_030 Hb_001352_030 Hb_003531_050 Hb_003531_050 Hb_001352_030--Hb_003531_050 Hb_000265_170 Hb_000265_170 Hb_001352_030--Hb_000265_170 Hb_001606_010 Hb_001606_010 Hb_001352_030--Hb_001606_010 Hb_010534_040 Hb_010534_040 Hb_001352_030--Hb_010534_040 Hb_005486_020 Hb_005486_020 Hb_001352_030--Hb_005486_020 Hb_002890_160 Hb_002890_160 Hb_001352_030--Hb_002890_160 Hb_003531_050--Hb_001606_010 Hb_001301_260 Hb_001301_260 Hb_003531_050--Hb_001301_260 Hb_003531_050--Hb_002890_160 Hb_003531_050--Hb_000265_170 Hb_000302_360 Hb_000302_360 Hb_003531_050--Hb_000302_360 Hb_003337_020 Hb_003337_020 Hb_000265_170--Hb_003337_020 Hb_000185_170 Hb_000185_170 Hb_000265_170--Hb_000185_170 Hb_111997_010 Hb_111997_010 Hb_000265_170--Hb_111997_010 Hb_000265_170--Hb_001606_010 Hb_001926_070 Hb_001926_070 Hb_001606_010--Hb_001926_070 Hb_000890_170 Hb_000890_170 Hb_001606_010--Hb_000890_170 Hb_000486_020 Hb_000486_020 Hb_001606_010--Hb_000486_020 Hb_032731_010 Hb_032731_010 Hb_001606_010--Hb_032731_010 Hb_010534_040--Hb_000302_360 Hb_010534_040--Hb_000486_020 Hb_010534_040--Hb_001606_010 Hb_000645_260 Hb_000645_260 Hb_010534_040--Hb_000645_260 Hb_010534_040--Hb_002890_160 Hb_000990_040 Hb_000990_040 Hb_005486_020--Hb_000990_040 Hb_029095_010 Hb_029095_010 Hb_005486_020--Hb_029095_010 Hb_002596_090 Hb_002596_090 Hb_005486_020--Hb_002596_090 Hb_093364_010 Hb_093364_010 Hb_005486_020--Hb_093364_010 Hb_005486_020--Hb_111997_010 Hb_003020_070 Hb_003020_070 Hb_002890_160--Hb_003020_070 Hb_000037_200 Hb_000037_200 Hb_002890_160--Hb_000037_200 Hb_000922_160 Hb_000922_160 Hb_002890_160--Hb_000922_160
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.311423 31.6454 90.9264 39.7795 0.105598 0.0705403
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.440998 1.19838 0.352174 9.92778 63.8001

CAGE analysis