Hb_000990_040

Information

Type transcription factor
Description TF Family: CPP
Location Contig990: 26104-34527
Sequence    

Annotation

kegg
ID rcu:RCOM_0802400
description transcription factor, putative
nr
ID XP_012077422.1
description PREDICTED: protein tesmin/TSO1-like CXC 7 [Jatropha curcas]
swissprot
ID Q9SZD1
description Protein tesmin/TSO1-like CXC 5 OS=Arabidopsis thaliana GN=TCX5 PE=1 SV=1
trembl
ID B9RS31
description Transcription factor, putative OS=Ricinus communis GN=RCOM_0802400 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000990_040 0.0 transcription factor TF Family: CPP PREDICTED: protein tesmin/TSO1-like CXC 7 [Jatropha curcas]
2 Hb_005486_020 0.0665451844 transcription factor TF Family: HB PREDICTED: homeobox-leucine zipper protein HAT5 [Jatropha curcas]
3 Hb_093364_010 0.0724723214 - - PREDICTED: uncharacterized protein LOC105636199 [Jatropha curcas]
4 Hb_004611_050 0.0744757285 - - PREDICTED: uncharacterized protein LOC105628744 [Jatropha curcas]
5 Hb_029095_010 0.0797021975 desease resistance Gene Name: NB-ARC hypothetical protein JCGZ_21060 [Jatropha curcas]
6 Hb_000185_170 0.0973225489 - - ATP binding protein, putative [Ricinus communis]
7 Hb_007894_120 0.1010869236 - - PREDICTED: 1-acyl-sn-glycerol-3-phosphate acyltransferase-like isoform X1 [Jatropha curcas]
8 Hb_006970_170 0.1068398521 transcription factor TF Family: bHLH DNA binding protein, putative [Ricinus communis]
9 Hb_017491_010 0.1073825471 - - PREDICTED: phosphoinositide phosphatase SAC2 isoform X1 [Jatropha curcas]
10 Hb_000689_010 0.1084893538 desease resistance Gene Name: LRR_8 PREDICTED: disease resistance protein RPM1-like isoform X1 [Populus euphratica]
11 Hb_044653_050 0.1098162296 - - PREDICTED: CTL-like protein DDB_G0274487 isoform X1 [Jatropha curcas]
12 Hb_070136_010 0.1121624702 - - TRANSPARENT TESTA 12 protein, putative [Ricinus communis]
13 Hb_000500_230 0.1127439523 - - hypothetical protein RCOM_0634810 [Ricinus communis]
14 Hb_000199_040 0.1158922704 desease resistance Gene Name: TIR PREDICTED: TMV resistance protein N-like isoform X1 [Jatropha curcas]
15 Hb_003029_010 0.1190905948 transcription factor TF Family: WRKY conserved hypothetical protein [Ricinus communis]
16 Hb_002596_090 0.1199706359 - - PREDICTED: calcium-transporting ATPase 4, plasma membrane-type-like isoform X1 [Jatropha curcas]
17 Hb_000062_050 0.1218898739 - - protein binding protein, putative [Ricinus communis]
18 Hb_001301_260 0.1220162446 - - PREDICTED: 1-acyl-sn-glycerol-3-phosphate acyltransferase-like isoform X1 [Jatropha curcas]
19 Hb_000020_020 0.1225874289 - - hypothetical protein JCGZ_06491 [Jatropha curcas]
20 Hb_002010_100 0.1253473864 - - PREDICTED: uncharacterized protein LOC105633355 [Jatropha curcas]

Gene co-expression network

sample Hb_000990_040 Hb_000990_040 Hb_005486_020 Hb_005486_020 Hb_000990_040--Hb_005486_020 Hb_093364_010 Hb_093364_010 Hb_000990_040--Hb_093364_010 Hb_004611_050 Hb_004611_050 Hb_000990_040--Hb_004611_050 Hb_029095_010 Hb_029095_010 Hb_000990_040--Hb_029095_010 Hb_000185_170 Hb_000185_170 Hb_000990_040--Hb_000185_170 Hb_007894_120 Hb_007894_120 Hb_000990_040--Hb_007894_120 Hb_005486_020--Hb_029095_010 Hb_001352_030 Hb_001352_030 Hb_005486_020--Hb_001352_030 Hb_002596_090 Hb_002596_090 Hb_005486_020--Hb_002596_090 Hb_005486_020--Hb_093364_010 Hb_111997_010 Hb_111997_010 Hb_005486_020--Hb_111997_010 Hb_093364_010--Hb_029095_010 Hb_093364_010--Hb_004611_050 Hb_000020_020 Hb_000020_020 Hb_093364_010--Hb_000020_020 Hb_093364_010--Hb_000185_170 Hb_004117_280 Hb_004117_280 Hb_004611_050--Hb_004117_280 Hb_004611_050--Hb_029095_010 Hb_004611_050--Hb_000020_020 Hb_004611_050--Hb_000185_170 Hb_029095_010--Hb_002596_090 Hb_031685_010 Hb_031685_010 Hb_029095_010--Hb_031685_010 Hb_070136_010 Hb_070136_010 Hb_000185_170--Hb_070136_010 Hb_000037_200 Hb_000037_200 Hb_000185_170--Hb_000037_200 Hb_002078_320 Hb_002078_320 Hb_000185_170--Hb_002078_320 Hb_000987_020 Hb_000987_020 Hb_000185_170--Hb_000987_020 Hb_001629_120 Hb_001629_120 Hb_000185_170--Hb_001629_120 Hb_000265_170 Hb_000265_170 Hb_000185_170--Hb_000265_170 Hb_017491_010 Hb_017491_010 Hb_007894_120--Hb_017491_010 Hb_006970_170 Hb_006970_170 Hb_007894_120--Hb_006970_170 Hb_000500_230 Hb_000500_230 Hb_007894_120--Hb_000500_230 Hb_044653_050 Hb_044653_050 Hb_007894_120--Hb_044653_050 Hb_000260_480 Hb_000260_480 Hb_007894_120--Hb_000260_480 Hb_000010_370 Hb_000010_370 Hb_007894_120--Hb_000010_370
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0115914 1.07374 2.0629 0.977845 0.0224638 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.487734 1.26597

CAGE analysis