Hb_000260_480

Information

Type transcription factor
Description TF Family: GRAS
Location Contig260: 333170-336235
Sequence    

Annotation

kegg
ID rcu:RCOM_1323550
description transcription factor, putative
nr
ID XP_012090957.1
description PREDICTED: protein SCARECROW [Jatropha curcas]
swissprot
ID Q2Z2E9
description Protein SCARECROW OS=Ipomoea nil GN=SCR PE=1 SV=1
trembl
ID A0A067JD88
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_00598 PE=4 SV=1
Gene Ontology
ID GO:0006351
description protein scarecrow-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_27008: 332595-332838 , PASA_asmbl_27010: 333780-336180
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000260_480 0.0 transcription factor TF Family: GRAS PREDICTED: protein SCARECROW [Jatropha curcas]
2 Hb_000500_230 0.0742775895 - - hypothetical protein RCOM_0634810 [Ricinus communis]
3 Hb_000010_370 0.0947961785 - - PREDICTED: uncharacterized protein LOC105640263 [Jatropha curcas]
4 Hb_006970_170 0.0949541114 transcription factor TF Family: bHLH DNA binding protein, putative [Ricinus communis]
5 Hb_007894_120 0.0963927422 - - PREDICTED: 1-acyl-sn-glycerol-3-phosphate acyltransferase-like isoform X1 [Jatropha curcas]
6 Hb_028928_020 0.1058561779 - - hypothetical protein CICLE_v10018504mg [Citrus clementina]
7 Hb_000025_590 0.1096499994 - - PREDICTED: cytochrome P450 94A1-like isoform X1 [Jatropha curcas]
8 Hb_002871_110 0.1110768683 transcription factor TF Family: ARF hypothetical protein POPTR_0014s12980g [Populus trichocarpa]
9 Hb_002809_120 0.1119821486 - - Uncharacterized protein TCM_031281 [Theobroma cacao]
10 Hb_006269_010 0.1121495121 - - hypothetical protein JCGZ_21552 [Jatropha curcas]
11 Hb_007747_100 0.1136303884 - - PREDICTED: probable F-box protein At1g60180 [Jatropha curcas]
12 Hb_004837_110 0.1142222547 - - PREDICTED: MATE efflux family protein 1 isoform X1 [Jatropha curcas]
13 Hb_170401_010 0.1142383702 - - receptor serine/threonine kinase, putative [Ricinus communis]
14 Hb_001153_090 0.1182101731 - - PREDICTED: protein FAM63A [Jatropha curcas]
15 Hb_002849_120 0.1191585487 - - ferric reductase oxidase [Manihot esculenta]
16 Hb_003387_080 0.1194211878 - - BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1 precursor, putative [Ricinus communis]
17 Hb_000215_290 0.1194448317 transcription factor TF Family: NAC PREDICTED: protein BEARSKIN2 isoform X2 [Jatropha curcas]
18 Hb_006483_090 0.1202059305 - - PREDICTED: uncharacterized protein LOC105639979 [Jatropha curcas]
19 Hb_017491_010 0.1208368628 - - PREDICTED: phosphoinositide phosphatase SAC2 isoform X1 [Jatropha curcas]
20 Hb_004324_220 0.1213948765 transcription factor TF Family: WRKY PREDICTED: probable WRKY transcription factor 53 [Jatropha curcas]

Gene co-expression network

sample Hb_000260_480 Hb_000260_480 Hb_000500_230 Hb_000500_230 Hb_000260_480--Hb_000500_230 Hb_000010_370 Hb_000010_370 Hb_000260_480--Hb_000010_370 Hb_006970_170 Hb_006970_170 Hb_000260_480--Hb_006970_170 Hb_007894_120 Hb_007894_120 Hb_000260_480--Hb_007894_120 Hb_028928_020 Hb_028928_020 Hb_000260_480--Hb_028928_020 Hb_000025_590 Hb_000025_590 Hb_000260_480--Hb_000025_590 Hb_000500_230--Hb_006970_170 Hb_000500_230--Hb_000010_370 Hb_000500_230--Hb_007894_120 Hb_002871_110 Hb_002871_110 Hb_000500_230--Hb_002871_110 Hb_017491_010 Hb_017491_010 Hb_000500_230--Hb_017491_010 Hb_000010_370--Hb_000025_590 Hb_000010_370--Hb_002871_110 Hb_000010_370--Hb_006970_170 Hb_000010_370--Hb_007894_120 Hb_006970_170--Hb_002871_110 Hb_006970_170--Hb_007894_120 Hb_030982_050 Hb_030982_050 Hb_006970_170--Hb_030982_050 Hb_003849_030 Hb_003849_030 Hb_006970_170--Hb_003849_030 Hb_007894_120--Hb_017491_010 Hb_044653_050 Hb_044653_050 Hb_007894_120--Hb_044653_050 Hb_033187_020 Hb_033187_020 Hb_028928_020--Hb_033187_020 Hb_002097_130 Hb_002097_130 Hb_028928_020--Hb_002097_130 Hb_005074_010 Hb_005074_010 Hb_028928_020--Hb_005074_010 Hb_006736_040 Hb_006736_040 Hb_028928_020--Hb_006736_040 Hb_000054_140 Hb_000054_140 Hb_028928_020--Hb_000054_140 Hb_024650_010 Hb_024650_010 Hb_028928_020--Hb_024650_010 Hb_032695_010 Hb_032695_010 Hb_000025_590--Hb_032695_010 Hb_000025_590--Hb_002871_110 Hb_000215_290 Hb_000215_290 Hb_000025_590--Hb_000215_290 Hb_000025_590--Hb_006970_170 Hb_032779_010 Hb_032779_010 Hb_000025_590--Hb_032779_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.02989 10.1594 8.0251 6.66313 0.00706024 0.0197481
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0.0480939 2.86819 8.34008

CAGE analysis