Hb_006970_170

Information

Type transcription factor
Description TF Family: bHLH
Location Contig6970: 140802-143809
Sequence    

Annotation

kegg
ID rcu:RCOM_1577230
description DNA binding protein, putative
nr
ID XP_002513457.1
description DNA binding protein, putative [Ricinus communis]
swissprot
ID Q9C690
description Transcription factor bHLH122 OS=Arabidopsis thaliana GN=BHLH122 PE=1 SV=1
trembl
ID B9RI88
description DNA binding protein, putative OS=Ricinus communis GN=RCOM_1577230 PE=4 SV=1
Gene Ontology
ID GO:0003700
description transcription factor bhlh122-like isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_54655: 140858-143952
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_006970_170 0.0 transcription factor TF Family: bHLH DNA binding protein, putative [Ricinus communis]
2 Hb_002871_110 0.0660488286 transcription factor TF Family: ARF hypothetical protein POPTR_0014s12980g [Populus trichocarpa]
3 Hb_000500_230 0.0671564429 - - hypothetical protein RCOM_0634810 [Ricinus communis]
4 Hb_007894_120 0.0766699498 - - PREDICTED: 1-acyl-sn-glycerol-3-phosphate acyltransferase-like isoform X1 [Jatropha curcas]
5 Hb_000010_370 0.0834763703 - - PREDICTED: uncharacterized protein LOC105640263 [Jatropha curcas]
6 Hb_030982_050 0.0870235257 - - PREDICTED: gamma-glutamyl hydrolase 2-like [Jatropha curcas]
7 Hb_003849_030 0.0921893527 - - hypothetical protein AALP_AA5G029900 [Arabis alpina]
8 Hb_106089_010 0.0932629775 - - PREDICTED: cytochrome P450 CYP82D47-like [Jatropha curcas]
9 Hb_000260_480 0.0949541114 transcription factor TF Family: GRAS PREDICTED: protein SCARECROW [Jatropha curcas]
10 Hb_000025_590 0.096611497 - - PREDICTED: cytochrome P450 94A1-like isoform X1 [Jatropha curcas]
11 Hb_017491_010 0.1008370427 - - PREDICTED: phosphoinositide phosphatase SAC2 isoform X1 [Jatropha curcas]
12 Hb_007747_100 0.105474444 - - PREDICTED: probable F-box protein At1g60180 [Jatropha curcas]
13 Hb_007483_080 0.1060927734 - - hypothetical protein RCOM_0634810 [Ricinus communis]
14 Hb_000990_040 0.1068398521 transcription factor TF Family: CPP PREDICTED: protein tesmin/TSO1-like CXC 7 [Jatropha curcas]
15 Hb_000046_430 0.1076878626 - - hypothetical protein JCGZ_02013 [Jatropha curcas]
16 Hb_000007_440 0.108196404 - - PREDICTED: putative phospholipid-transporting ATPase 9 [Jatropha curcas]
17 Hb_044653_050 0.1092590243 - - PREDICTED: CTL-like protein DDB_G0274487 isoform X1 [Jatropha curcas]
18 Hb_119066_010 0.1114531127 - - PREDICTED: uncharacterized protein LOC105641552 [Jatropha curcas]
19 Hb_000689_010 0.1147403151 desease resistance Gene Name: LRR_8 PREDICTED: disease resistance protein RPM1-like isoform X1 [Populus euphratica]
20 Hb_000694_050 0.1159476021 - - Nuclease PA3, putative [Ricinus communis]

Gene co-expression network

sample Hb_006970_170 Hb_006970_170 Hb_002871_110 Hb_002871_110 Hb_006970_170--Hb_002871_110 Hb_000500_230 Hb_000500_230 Hb_006970_170--Hb_000500_230 Hb_007894_120 Hb_007894_120 Hb_006970_170--Hb_007894_120 Hb_000010_370 Hb_000010_370 Hb_006970_170--Hb_000010_370 Hb_030982_050 Hb_030982_050 Hb_006970_170--Hb_030982_050 Hb_003849_030 Hb_003849_030 Hb_006970_170--Hb_003849_030 Hb_002871_110--Hb_000010_370 Hb_002871_110--Hb_000500_230 Hb_000025_590 Hb_000025_590 Hb_002871_110--Hb_000025_590 Hb_000694_050 Hb_000694_050 Hb_002871_110--Hb_000694_050 Hb_002871_110--Hb_007894_120 Hb_000500_230--Hb_000010_370 Hb_000260_480 Hb_000260_480 Hb_000500_230--Hb_000260_480 Hb_000500_230--Hb_007894_120 Hb_017491_010 Hb_017491_010 Hb_000500_230--Hb_017491_010 Hb_007894_120--Hb_017491_010 Hb_044653_050 Hb_044653_050 Hb_007894_120--Hb_044653_050 Hb_007894_120--Hb_000260_480 Hb_007894_120--Hb_000010_370 Hb_000010_370--Hb_000025_590 Hb_000010_370--Hb_000260_480 Hb_106089_010 Hb_106089_010 Hb_030982_050--Hb_106089_010 Hb_142026_010 Hb_142026_010 Hb_030982_050--Hb_142026_010 Hb_000163_180 Hb_000163_180 Hb_030982_050--Hb_000163_180 Hb_001141_160 Hb_001141_160 Hb_030982_050--Hb_001141_160 Hb_000046_430 Hb_000046_430 Hb_030982_050--Hb_000046_430 Hb_002849_120 Hb_002849_120 Hb_003849_030--Hb_002849_120 Hb_001160_020 Hb_001160_020 Hb_003849_030--Hb_001160_020 Hb_003849_030--Hb_000046_430 Hb_007113_020 Hb_007113_020 Hb_003849_030--Hb_007113_020 Hb_001153_090 Hb_001153_090 Hb_003849_030--Hb_001153_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0706139 12.4361 15.6511 12.2368 0.132569 0.162355
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.06435 0 0.0961325 6.64474 14.7506

CAGE analysis