Hb_000010_370

Information

Type -
Description -
Location Contig10: 399180-399968
Sequence    

Annotation

kegg
ID rcu:RCOM_1507640
description hypothetical protein
nr
ID XP_012079924.1
description PREDICTED: uncharacterized protein LOC105640263 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067K7H2
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_11364 PE=4 SV=1
Gene Ontology
ID GO:0008168
description s-adenosyl-l-methionine-dependent methyltransferases superfamily protein isoform 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000010_370 0.0 - - PREDICTED: uncharacterized protein LOC105640263 [Jatropha curcas]
2 Hb_000025_590 0.0616366105 - - PREDICTED: cytochrome P450 94A1-like isoform X1 [Jatropha curcas]
3 Hb_000500_230 0.0727752841 - - hypothetical protein RCOM_0634810 [Ricinus communis]
4 Hb_002871_110 0.0790489201 transcription factor TF Family: ARF hypothetical protein POPTR_0014s12980g [Populus trichocarpa]
5 Hb_006970_170 0.0834763703 transcription factor TF Family: bHLH DNA binding protein, putative [Ricinus communis]
6 Hb_000260_480 0.0947961785 transcription factor TF Family: GRAS PREDICTED: protein SCARECROW [Jatropha curcas]
7 Hb_007894_120 0.0999664635 - - PREDICTED: 1-acyl-sn-glycerol-3-phosphate acyltransferase-like isoform X1 [Jatropha curcas]
8 Hb_032779_010 0.101899174 - - unnamed protein product [Vitis vinifera]
9 Hb_032695_010 0.1025488424 - - PREDICTED: LRR receptor-like serine/threonine-protein kinase FLS2 [Vitis vinifera]
10 Hb_003849_030 0.1057968463 - - hypothetical protein AALP_AA5G029900 [Arabis alpina]
11 Hb_017491_010 0.1077894301 - - PREDICTED: phosphoinositide phosphatase SAC2 isoform X1 [Jatropha curcas]
12 Hb_001579_060 0.1091043251 - - carbonic anhydrase, putative [Ricinus communis]
13 Hb_170401_010 0.112727484 - - receptor serine/threonine kinase, putative [Ricinus communis]
14 Hb_000987_020 0.1156501877 - - PREDICTED: protein trichome birefringence-like 35 [Jatropha curcas]
15 Hb_004880_050 0.1163493448 - - conserved hypothetical protein [Ricinus communis]
16 Hb_001883_010 0.1166667418 desease resistance Gene Name: NB-ARC PREDICTED: disease resistance protein RPM1 [Jatropha curcas]
17 Hb_000694_050 0.1166946516 - - Nuclease PA3, putative [Ricinus communis]
18 Hb_000215_290 0.1179564484 transcription factor TF Family: NAC PREDICTED: protein BEARSKIN2 isoform X2 [Jatropha curcas]
19 Hb_001629_120 0.1187133091 desease resistance Gene Name: NB-ARC PREDICTED: probable disease resistance protein At4g27220 isoform X2 [Populus euphratica]
20 Hb_000680_130 0.121244041 - - beta-galactosidase, putative [Ricinus communis]

Gene co-expression network

sample Hb_000010_370 Hb_000010_370 Hb_000025_590 Hb_000025_590 Hb_000010_370--Hb_000025_590 Hb_000500_230 Hb_000500_230 Hb_000010_370--Hb_000500_230 Hb_002871_110 Hb_002871_110 Hb_000010_370--Hb_002871_110 Hb_006970_170 Hb_006970_170 Hb_000010_370--Hb_006970_170 Hb_000260_480 Hb_000260_480 Hb_000010_370--Hb_000260_480 Hb_007894_120 Hb_007894_120 Hb_000010_370--Hb_007894_120 Hb_032695_010 Hb_032695_010 Hb_000025_590--Hb_032695_010 Hb_000025_590--Hb_002871_110 Hb_000215_290 Hb_000215_290 Hb_000025_590--Hb_000215_290 Hb_000025_590--Hb_006970_170 Hb_032779_010 Hb_032779_010 Hb_000025_590--Hb_032779_010 Hb_000500_230--Hb_006970_170 Hb_000500_230--Hb_000260_480 Hb_000500_230--Hb_007894_120 Hb_000500_230--Hb_002871_110 Hb_017491_010 Hb_017491_010 Hb_000500_230--Hb_017491_010 Hb_002871_110--Hb_006970_170 Hb_000694_050 Hb_000694_050 Hb_002871_110--Hb_000694_050 Hb_002871_110--Hb_007894_120 Hb_006970_170--Hb_007894_120 Hb_030982_050 Hb_030982_050 Hb_006970_170--Hb_030982_050 Hb_003849_030 Hb_003849_030 Hb_006970_170--Hb_003849_030 Hb_000260_480--Hb_006970_170 Hb_000260_480--Hb_007894_120 Hb_028928_020 Hb_028928_020 Hb_000260_480--Hb_028928_020 Hb_000260_480--Hb_000025_590 Hb_007894_120--Hb_017491_010 Hb_044653_050 Hb_044653_050 Hb_007894_120--Hb_044653_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0298654 6.87433 7.94144 5.70365 0 0.0364347
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.0540495 0 2.93296 9.75114

CAGE analysis