Hb_017491_010

Information

Type -
Description -
Location Contig17491: 8597-18183
Sequence    

Annotation

kegg
ID pop:POPTR_0003s06890g
description POPTRDRAFT_817146; phosphoinositide phosphatase family protein
nr
ID XP_012068819.1
description PREDICTED: phosphoinositide phosphatase SAC2 isoform X1 [Jatropha curcas]
swissprot
ID Q94A27
description Phosphoinositide phosphatase SAC2 OS=Arabidopsis thaliana GN=SAC2 PE=2 SV=1
trembl
ID A0A067KWR4
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_24650 PE=4 SV=1
Gene Ontology
ID GO:0016798
description phosphoinositide phosphatase sac2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_16648: 7165-9141 , PASA_asmbl_16649: 7424-11579 , PASA_asmbl_16650: 12295-12680 , PASA_asmbl_16651: 11580-15649 , PASA_asmbl_16652: 17560-17983
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_017491_010 0.0 - - PREDICTED: phosphoinositide phosphatase SAC2 isoform X1 [Jatropha curcas]
2 Hb_007894_120 0.0756979953 - - PREDICTED: 1-acyl-sn-glycerol-3-phosphate acyltransferase-like isoform X1 [Jatropha curcas]
3 Hb_044653_050 0.0811184664 - - PREDICTED: CTL-like protein DDB_G0274487 isoform X1 [Jatropha curcas]
4 Hb_003071_050 0.0831644687 transcription factor TF Family: ERF ethylene-responsive element binding protein 2 [Hevea brasiliensis]
5 Hb_000260_410 0.0840345279 - - PREDICTED: protein LURP-one-related 8 [Jatropha curcas]
6 Hb_000500_230 0.0884256695 - - hypothetical protein RCOM_0634810 [Ricinus communis]
7 Hb_000818_090 0.0999400116 - - glutamate receptor 3 plant, putative [Ricinus communis]
8 Hb_006970_170 0.1008370427 transcription factor TF Family: bHLH DNA binding protein, putative [Ricinus communis]
9 Hb_001629_120 0.1027521241 desease resistance Gene Name: NB-ARC PREDICTED: probable disease resistance protein At4g27220 isoform X2 [Populus euphratica]
10 Hb_003454_050 0.1072879762 - - PREDICTED: probable methyltransferase PMT14 [Jatropha curcas]
11 Hb_000990_040 0.1073825471 transcription factor TF Family: CPP PREDICTED: protein tesmin/TSO1-like CXC 7 [Jatropha curcas]
12 Hb_005365_010 0.1076699878 - - PREDICTED: serine carboxypeptidase-like 20 [Jatropha curcas]
13 Hb_000010_370 0.1077894301 - - PREDICTED: uncharacterized protein LOC105640263 [Jatropha curcas]
14 Hb_004880_050 0.1122999985 - - conserved hypothetical protein [Ricinus communis]
15 Hb_000941_090 0.1124677394 - - PREDICTED: protein trichome birefringence [Jatropha curcas]
16 Hb_004228_070 0.1126110938 - - PREDICTED: uncharacterized protein LOC103338699 [Prunus mume]
17 Hb_106089_010 0.114020433 - - PREDICTED: cytochrome P450 CYP82D47-like [Jatropha curcas]
18 Hb_001301_260 0.114222583 - - PREDICTED: 1-acyl-sn-glycerol-3-phosphate acyltransferase-like isoform X1 [Jatropha curcas]
19 Hb_001143_120 0.1174619998 - - PREDICTED: uncharacterized protein LOC105638955 [Jatropha curcas]
20 Hb_001789_120 0.1178731008 - - PREDICTED: short-chain dehydrogenase TIC 32, chloroplastic-like [Jatropha curcas]

Gene co-expression network

sample Hb_017491_010 Hb_017491_010 Hb_007894_120 Hb_007894_120 Hb_017491_010--Hb_007894_120 Hb_044653_050 Hb_044653_050 Hb_017491_010--Hb_044653_050 Hb_003071_050 Hb_003071_050 Hb_017491_010--Hb_003071_050 Hb_000260_410 Hb_000260_410 Hb_017491_010--Hb_000260_410 Hb_000500_230 Hb_000500_230 Hb_017491_010--Hb_000500_230 Hb_000818_090 Hb_000818_090 Hb_017491_010--Hb_000818_090 Hb_006970_170 Hb_006970_170 Hb_007894_120--Hb_006970_170 Hb_007894_120--Hb_000500_230 Hb_007894_120--Hb_044653_050 Hb_000260_480 Hb_000260_480 Hb_007894_120--Hb_000260_480 Hb_000010_370 Hb_000010_370 Hb_007894_120--Hb_000010_370 Hb_007130_020 Hb_007130_020 Hb_044653_050--Hb_007130_020 Hb_004228_070 Hb_004228_070 Hb_044653_050--Hb_004228_070 Hb_005365_010 Hb_005365_010 Hb_044653_050--Hb_005365_010 Hb_001301_260 Hb_001301_260 Hb_044653_050--Hb_001301_260 Hb_003071_050--Hb_000260_410 Hb_007257_070 Hb_007257_070 Hb_003071_050--Hb_007257_070 Hb_007221_040 Hb_007221_040 Hb_003071_050--Hb_007221_040 Hb_001269_240 Hb_001269_240 Hb_003071_050--Hb_001269_240 Hb_003071_050--Hb_044653_050 Hb_000173_270 Hb_000173_270 Hb_000260_410--Hb_000173_270 Hb_000272_030 Hb_000272_030 Hb_000260_410--Hb_000272_030 Hb_001629_120 Hb_001629_120 Hb_000260_410--Hb_001629_120 Hb_000941_090 Hb_000941_090 Hb_000260_410--Hb_000941_090 Hb_000260_410--Hb_000818_090 Hb_000500_230--Hb_006970_170 Hb_000500_230--Hb_000010_370 Hb_000500_230--Hb_000260_480 Hb_002871_110 Hb_002871_110 Hb_000500_230--Hb_002871_110 Hb_001789_120 Hb_001789_120 Hb_000818_090--Hb_001789_120 Hb_013394_120 Hb_013394_120 Hb_000818_090--Hb_013394_120 Hb_009393_090 Hb_009393_090 Hb_000818_090--Hb_009393_090 Hb_004880_050 Hb_004880_050 Hb_000818_090--Hb_004880_050 Hb_000818_090--Hb_005365_010 Hb_001100_070 Hb_001100_070 Hb_000818_090--Hb_001100_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0323069 10.242 14.4397 12.0538 0.249599 0.0462019
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0146525 0.0230608 0 2.73954 12.9872

CAGE analysis