Hb_000272_030

Information

Type -
Description -
Location Contig272: 45867-49738
Sequence    

Annotation

kegg
ID rcu:RCOM_0701430
description protein with unknown function
nr
ID XP_012071451.1
description PREDICTED: WD repeat-containing protein 76 isoform X1 [Jatropha curcas]
swissprot
ID Q4KLQ5
description WD repeat-containing protein 76 OS=Xenopus laevis GN=wdr76 PE=2 SV=1
trembl
ID A0A067L3G7
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_03987 PE=4 SV=1
Gene Ontology
ID GO:0001101
description wd repeat-containing protein 76-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_28463: 45666-49724
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000272_030 0.0 - - PREDICTED: WD repeat-containing protein 76 isoform X1 [Jatropha curcas]
2 Hb_006570_060 0.0881940508 - - PREDICTED: uncharacterized protein LOC105635332 [Jatropha curcas]
3 Hb_000260_410 0.0904489491 - - PREDICTED: protein LURP-one-related 8 [Jatropha curcas]
4 Hb_000941_090 0.092588041 - - PREDICTED: protein trichome birefringence [Jatropha curcas]
5 Hb_002838_010 0.0964386772 - - AGPase large subunit protein [Hevea brasiliensis]
6 Hb_000173_270 0.0998854651 - - PREDICTED: mitogen-activated protein kinase 15 isoform X2 [Jatropha curcas]
7 Hb_000107_090 0.1034978134 - - PREDICTED: kinesin KP1 [Jatropha curcas]
8 Hb_031862_120 0.1040793219 - - PREDICTED: root phototropism protein 3 [Jatropha curcas]
9 Hb_000659_040 0.1068382805 - - PREDICTED: plasma membrane ATPase 2-like isoform X1 [Jatropha curcas]
10 Hb_000181_330 0.1130151456 - - ubiquitin ligase protein cop1, putative [Ricinus communis]
11 Hb_028227_040 0.1180426483 - - PREDICTED: uncharacterized protein LOC105645005 [Jatropha curcas]
12 Hb_002311_280 0.1189387416 - - PREDICTED: probable polygalacturonase [Jatropha curcas]
13 Hb_005488_130 0.122494908 - - transporter, putative [Ricinus communis]
14 Hb_000252_260 0.1234258469 - - PREDICTED: protein TRANSPARENT TESTA 12-like [Jatropha curcas]
15 Hb_000326_080 0.1265579372 - - lrr receptor protein kinase, putative [Ricinus communis]
16 Hb_000856_200 0.1303672295 - - ATPase 4, plasma membrane-type -like protein [Gossypium arboreum]
17 Hb_000069_690 0.1319837035 transcription factor TF Family: ERF PREDICTED: ethylene-responsive transcription factor CRF6 [Jatropha curcas]
18 Hb_001143_120 0.1320742068 - - PREDICTED: uncharacterized protein LOC105638955 [Jatropha curcas]
19 Hb_000818_090 0.1331990035 - - glutamate receptor 3 plant, putative [Ricinus communis]
20 Hb_001789_120 0.1333039691 - - PREDICTED: short-chain dehydrogenase TIC 32, chloroplastic-like [Jatropha curcas]

Gene co-expression network

sample Hb_000272_030 Hb_000272_030 Hb_006570_060 Hb_006570_060 Hb_000272_030--Hb_006570_060 Hb_000260_410 Hb_000260_410 Hb_000272_030--Hb_000260_410 Hb_000941_090 Hb_000941_090 Hb_000272_030--Hb_000941_090 Hb_002838_010 Hb_002838_010 Hb_000272_030--Hb_002838_010 Hb_000173_270 Hb_000173_270 Hb_000272_030--Hb_000173_270 Hb_000107_090 Hb_000107_090 Hb_000272_030--Hb_000107_090 Hb_006570_060--Hb_000173_270 Hb_006570_060--Hb_000260_410 Hb_001143_120 Hb_001143_120 Hb_006570_060--Hb_001143_120 Hb_004880_050 Hb_004880_050 Hb_006570_060--Hb_004880_050 Hb_000659_040 Hb_000659_040 Hb_006570_060--Hb_000659_040 Hb_000260_410--Hb_000173_270 Hb_017491_010 Hb_017491_010 Hb_000260_410--Hb_017491_010 Hb_001629_120 Hb_001629_120 Hb_000260_410--Hb_001629_120 Hb_000260_410--Hb_000941_090 Hb_000818_090 Hb_000818_090 Hb_000260_410--Hb_000818_090 Hb_000941_090--Hb_002838_010 Hb_001417_060 Hb_001417_060 Hb_000941_090--Hb_001417_060 Hb_031862_120 Hb_031862_120 Hb_000941_090--Hb_031862_120 Hb_001789_120 Hb_001789_120 Hb_000941_090--Hb_001789_120 Hb_002838_010--Hb_001143_120 Hb_001486_100 Hb_001486_100 Hb_002838_010--Hb_001486_100 Hb_002838_010--Hb_000260_410 Hb_002838_010--Hb_000659_040 Hb_005365_010 Hb_005365_010 Hb_000173_270--Hb_005365_010 Hb_000173_270--Hb_001629_120 Hb_044653_050 Hb_044653_050 Hb_000173_270--Hb_044653_050 Hb_008165_050 Hb_008165_050 Hb_000107_090--Hb_008165_050 Hb_004117_370 Hb_004117_370 Hb_000107_090--Hb_004117_370 Hb_000107_090--Hb_000260_410 Hb_000787_210 Hb_000787_210 Hb_000107_090--Hb_000787_210 Hb_024066_040 Hb_024066_040 Hb_000107_090--Hb_024066_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.282721 10.5931 13.8056 15.4763 0.13644 0.572295
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.516717 0.609763 0.476801 2.8306 18.9519

CAGE analysis