Hb_008165_050

Information

Type -
Description -
Location Contig8165: 100532-103787
Sequence    

Annotation

kegg
ID rcu:RCOM_0272270
description hydrolase, hydrolyzing O-glycosyl compounds, putative (EC:2.4.1.67)
nr
ID XP_002531958.1
description hydrolase, hydrolyzing O-glycosyl compounds, putative [Ricinus communis]
swissprot
ID Q8RX87
description Probable galactinol--sucrose galactosyltransferase 6 OS=Arabidopsis thaliana GN=RFS6 PE=2 SV=2
trembl
ID B9T139
description Hydrolase, hydrolyzing O-glycosyl compounds, putative OS=Ricinus communis GN=RCOM_0272270 PE=4 SV=1
Gene Ontology
ID GO:0003824
description probable galactinol--sucrose galactosyltransferase 6 isoform x2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_59452: 100538-103770
cDNA
(Sanger)
(ID:Location)		 003_J20.ab1: 102833-103649

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_008165_050 0.0 - - hydrolase, hydrolyzing O-glycosyl compounds, putative [Ricinus communis]
2 Hb_000107_090 0.0957092451 - - PREDICTED: kinesin KP1 [Jatropha curcas]
3 Hb_001242_040 0.127525574 - - PREDICTED: myb-related transcription factor, partner of profilin-like [Populus euphratica]
4 Hb_000320_390 0.1349037436 transcription factor TF Family: MYB-related PREDICTED: transcription factor CPC-like [Jatropha curcas]
5 Hb_000272_030 0.1356305637 - - PREDICTED: WD repeat-containing protein 76 isoform X1 [Jatropha curcas]
6 Hb_000127_100 0.1383651827 - - PREDICTED: myb-related transcription factor, partner of profilin-like [Populus euphratica]
7 Hb_004117_370 0.1385653422 - - PREDICTED: U-box domain-containing protein 16 [Jatropha curcas]
8 Hb_020141_030 0.1422761831 - - solanesyl diphosphate synthase, putative [Ricinus communis]
9 Hb_010222_060 0.1435726207 - - PREDICTED: acyltransferase-like protein At1g54570, chloroplastic isoform X1 [Jatropha curcas]
10 Hb_000815_090 0.1441439703 - - PREDICTED: uncharacterized protein LOC105630464 isoform X1 [Jatropha curcas]
11 Hb_004880_050 0.1466409082 - - conserved hypothetical protein [Ricinus communis]
12 Hb_019863_050 0.1469615613 - - PREDICTED: uncharacterized protein LOC103343426 [Prunus mume]
13 Hb_006570_060 0.1475029841 - - PREDICTED: uncharacterized protein LOC105635332 [Jatropha curcas]
14 Hb_022693_080 0.1476588564 - - PREDICTED: protein NUCLEAR FUSION DEFECTIVE 4 [Jatropha curcas]
15 Hb_002713_060 0.1487476272 - - PREDICTED: protein NRT1/ PTR FAMILY 6.4 [Jatropha curcas]
16 Hb_132840_170 0.1488939897 transcription factor TF Family: NAC Transcription factor [Theobroma cacao]
17 Hb_000061_440 0.1492330201 transcription factor TF Family: bHLH DNA binding protein, putative [Ricinus communis]
18 Hb_013394_120 0.1494605233 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase At1g34300 [Jatropha curcas]
19 Hb_000608_290 0.1520069918 - - thioredoxin f-type, putative [Ricinus communis]
20 Hb_000787_210 0.1520278766 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_008165_050 Hb_008165_050 Hb_000107_090 Hb_000107_090 Hb_008165_050--Hb_000107_090 Hb_001242_040 Hb_001242_040 Hb_008165_050--Hb_001242_040 Hb_000320_390 Hb_000320_390 Hb_008165_050--Hb_000320_390 Hb_000272_030 Hb_000272_030 Hb_008165_050--Hb_000272_030 Hb_000127_100 Hb_000127_100 Hb_008165_050--Hb_000127_100 Hb_004117_370 Hb_004117_370 Hb_008165_050--Hb_004117_370 Hb_000107_090--Hb_000272_030 Hb_000107_090--Hb_004117_370 Hb_000260_410 Hb_000260_410 Hb_000107_090--Hb_000260_410 Hb_000787_210 Hb_000787_210 Hb_000107_090--Hb_000787_210 Hb_024066_040 Hb_024066_040 Hb_000107_090--Hb_024066_040 Hb_028227_040 Hb_028227_040 Hb_001242_040--Hb_028227_040 Hb_005051_010 Hb_005051_010 Hb_001242_040--Hb_005051_010 Hb_005211_210 Hb_005211_210 Hb_001242_040--Hb_005211_210 Hb_008689_010 Hb_008689_010 Hb_001242_040--Hb_008689_010 Hb_000434_060 Hb_000434_060 Hb_001242_040--Hb_000434_060 Hb_010222_060 Hb_010222_060 Hb_001242_040--Hb_010222_060 Hb_001014_020 Hb_001014_020 Hb_000320_390--Hb_001014_020 Hb_013394_120 Hb_013394_120 Hb_000320_390--Hb_013394_120 Hb_000320_390--Hb_010222_060 Hb_000320_390--Hb_000272_030 Hb_000173_270 Hb_000173_270 Hb_000320_390--Hb_000173_270 Hb_000320_390--Hb_000260_410 Hb_006570_060 Hb_006570_060 Hb_000272_030--Hb_006570_060 Hb_000272_030--Hb_000260_410 Hb_000941_090 Hb_000941_090 Hb_000272_030--Hb_000941_090 Hb_002838_010 Hb_002838_010 Hb_000272_030--Hb_002838_010 Hb_000272_030--Hb_000173_270 Hb_000002_500 Hb_000002_500 Hb_000127_100--Hb_000002_500 Hb_000116_220 Hb_000116_220 Hb_000127_100--Hb_000116_220 Hb_000982_100 Hb_000982_100 Hb_000127_100--Hb_000982_100 Hb_000618_110 Hb_000618_110 Hb_000127_100--Hb_000618_110 Hb_002818_150 Hb_002818_150 Hb_000127_100--Hb_002818_150 Hb_000127_100--Hb_004117_370 Hb_012833_010 Hb_012833_010 Hb_004117_370--Hb_012833_010 Hb_004531_170 Hb_004531_170 Hb_004117_370--Hb_004531_170 Hb_004117_370--Hb_000982_100 Hb_000167_100 Hb_000167_100 Hb_004117_370--Hb_000167_100
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.97061 43.3645 54.3263 53.3333 0.339949 0.342728
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.32289 0.765794 5.90091 4.85154 108.156

CAGE analysis