Hb_000127_100

Information

Type -
Description -
Location Contig127: 117762-120426
Sequence    

Annotation

kegg
ID pop:POPTR_0005s21790g
description POPTRDRAFT_818603; ONE-HELIX protein 2
nr
ID XP_011042890.1
description PREDICTED: myb-related transcription factor, partner of profilin-like [Populus euphratica]
swissprot
ID -
description -
trembl
ID B9H7V8
description ONE-HELIX protein 2 OS=Populus trichocarpa GN=POPTR_0005s21790g PE=4 SV=2
Gene Ontology
ID GO:0009535
description one-helix protein 2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_08281: 117811-120301
cDNA
(Sanger)
(ID:Location)		 007_E01.ab1: 117862-120290

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000127_100 0.0 - - PREDICTED: myb-related transcription factor, partner of profilin-like [Populus euphratica]
2 Hb_000002_500 0.1108856196 - - PREDICTED: uncharacterized protein LOC105632094 isoform X1 [Jatropha curcas]
3 Hb_000116_220 0.1157606411 - - conserved hypothetical protein [Ricinus communis]
4 Hb_000982_100 0.1160906079 transcription factor TF Family: bHLH PREDICTED: transcription factor PIF1-like isoform X1 [Jatropha curcas]
5 Hb_000618_110 0.1168384788 - - hypothetical protein POPTR_0003s09870g [Populus trichocarpa]
6 Hb_002818_150 0.1176644168 transcription factor TF Family: MYB hypothetical protein POPTR_0014s10680g [Populus trichocarpa]
7 Hb_004117_370 0.1195764695 - - PREDICTED: U-box domain-containing protein 16 [Jatropha curcas]
8 Hb_000608_290 0.1211317468 - - thioredoxin f-type, putative [Ricinus communis]
9 Hb_003680_060 0.1227601085 - - hypothetical protein VITISV_022322 [Vitis vinifera]
10 Hb_000002_300 0.1228105623 - - Desacetoxyvindoline 4-hydroxylase, putative [Ricinus communis]
11 Hb_000140_460 0.1230089764 - - PREDICTED: uncharacterized protein LOC105628417 [Jatropha curcas]
12 Hb_001051_010 0.1236730792 - - PREDICTED: putative cyclic nucleotide-gated ion channel 15 [Jatropha curcas]
13 Hb_000948_120 0.1242119413 - - PREDICTED: uncharacterized protein LOC105634688 isoform X1 [Jatropha curcas]
14 Hb_018591_020 0.1252113023 - - Ribulose bisphosphate carboxylase/oxygenase activase 1, chloroplast precursor, putative [Ricinus communis]
15 Hb_014720_140 0.126295063 - - PREDICTED: uncharacterized protein LOC105640367 [Jatropha curcas]
16 Hb_009838_070 0.1266608379 - - PREDICTED: 28 kDa ribonucleoprotein, chloroplastic [Jatropha curcas]
17 Hb_001014_020 0.1270298367 - - gene GA family protein [Populus trichocarpa]
18 Hb_004531_170 0.1271429264 - - PREDICTED: probable inactive nicotinamidase At3g16190 [Jatropha curcas]
19 Hb_000046_120 0.1284123321 rubber biosynthesis Gene Name: 1-deoxy-D-xylulose-5-phosphate synthase putative 1-deoxy-D-xylulose 5-phosphate synthase [Hevea brasiliensis]
20 Hb_003373_050 0.1295246603 - - receptor protein kinase zmpk1, putative [Ricinus communis]

Gene co-expression network

sample Hb_000127_100 Hb_000127_100 Hb_000002_500 Hb_000002_500 Hb_000127_100--Hb_000002_500 Hb_000116_220 Hb_000116_220 Hb_000127_100--Hb_000116_220 Hb_000982_100 Hb_000982_100 Hb_000127_100--Hb_000982_100 Hb_000618_110 Hb_000618_110 Hb_000127_100--Hb_000618_110 Hb_002818_150 Hb_002818_150 Hb_000127_100--Hb_002818_150 Hb_004117_370 Hb_004117_370 Hb_000127_100--Hb_004117_370 Hb_000046_120 Hb_000046_120 Hb_000002_500--Hb_000046_120 Hb_018591_020 Hb_018591_020 Hb_000002_500--Hb_018591_020 Hb_001115_070 Hb_001115_070 Hb_000002_500--Hb_001115_070 Hb_002284_160 Hb_002284_160 Hb_000002_500--Hb_002284_160 Hb_102179_010 Hb_102179_010 Hb_000002_500--Hb_102179_010 Hb_003435_030 Hb_003435_030 Hb_000002_500--Hb_003435_030 Hb_000327_260 Hb_000327_260 Hb_000116_220--Hb_000327_260 Hb_003680_060 Hb_003680_060 Hb_000116_220--Hb_003680_060 Hb_009838_070 Hb_009838_070 Hb_000116_220--Hb_009838_070 Hb_007597_030 Hb_007597_030 Hb_000116_220--Hb_007597_030 Hb_005000_110 Hb_005000_110 Hb_000116_220--Hb_005000_110 Hb_000020_090 Hb_000020_090 Hb_000116_220--Hb_000020_090 Hb_000645_260 Hb_000645_260 Hb_000982_100--Hb_000645_260 Hb_004531_170 Hb_004531_170 Hb_000982_100--Hb_004531_170 Hb_002244_020 Hb_002244_020 Hb_000982_100--Hb_002244_020 Hb_000486_020 Hb_000486_020 Hb_000982_100--Hb_000486_020 Hb_000982_100--Hb_004117_370 Hb_004096_210 Hb_004096_210 Hb_000618_110--Hb_004096_210 Hb_000847_030 Hb_000847_030 Hb_000618_110--Hb_000847_030 Hb_000140_460 Hb_000140_460 Hb_000618_110--Hb_000140_460 Hb_006970_030 Hb_006970_030 Hb_000618_110--Hb_006970_030 Hb_000866_020 Hb_000866_020 Hb_000618_110--Hb_000866_020 Hb_009393_130 Hb_009393_130 Hb_000618_110--Hb_009393_130 Hb_002818_150--Hb_000046_120 Hb_002818_150--Hb_000020_090 Hb_002818_150--Hb_000002_500 Hb_001210_060 Hb_001210_060 Hb_002818_150--Hb_001210_060 Hb_005725_240 Hb_005725_240 Hb_002818_150--Hb_005725_240 Hb_001942_010 Hb_001942_010 Hb_002818_150--Hb_001942_010 Hb_012833_010 Hb_012833_010 Hb_004117_370--Hb_012833_010 Hb_000107_090 Hb_000107_090 Hb_004117_370--Hb_000107_090 Hb_004117_370--Hb_004531_170 Hb_000167_100 Hb_000167_100 Hb_004117_370--Hb_000167_100
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.14424 28.1111 79.7126 55.9322 1.39393 2.88171
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.17524 2.73453 1.77545 4.05531 105.549

CAGE analysis