Hb_018591_020

Information

Type -
Description -
Location Contig18591: 36600-39388
Sequence    

Annotation

kegg
ID rcu:RCOM_0233730
description Ribulose bisphosphate carboxylase/oxygenase activase 1, chloroplast precursor, putative
nr
ID XP_002532996.1
description Ribulose bisphosphate carboxylase/oxygenase activase 1, chloroplast precursor, putative [Ricinus communis]
swissprot
ID Q7X9A0
description Ribulose bisphosphate carboxylase/oxygenase activase 1, chloroplastic OS=Larrea tridentata GN=RCA1 PE=1 SV=1
trembl
ID B9T427
description Ribulose bisphosphate carboxylase/oxygenase activase 1, chloroplast, putative OS=Ricinus communis GN=RCOM_0233730 PE=4 SV=1
Gene Ontology
ID GO:0005524
description ribulose bisphosphate carboxylase oxygenase activase chloroplast

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_18217: 36478-39242 , PASA_asmbl_18218: 36650-39242
cDNA
(Sanger)
(ID:Location)		 034_A06.ab1: 37808-39242 , 041_O17.ab1: 38193-39139

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_018591_020 0.0 - - Ribulose bisphosphate carboxylase/oxygenase activase 1, chloroplast precursor, putative [Ricinus communis]
2 Hb_002007_220 0.0596845143 - - PREDICTED: signal recognition particle 43 kDa protein, chloroplastic [Jatropha curcas]
3 Hb_000046_120 0.0609950362 rubber biosynthesis Gene Name: 1-deoxy-D-xylulose-5-phosphate synthase putative 1-deoxy-D-xylulose 5-phosphate synthase [Hevea brasiliensis]
4 Hb_033363_040 0.0651707617 - - PREDICTED: probable galacturonosyltransferase-like 3 [Jatropha curcas]
5 Hb_025557_060 0.0682464756 transcription factor TF Family: MYB Myb-related protein 306, putative isoform 1 [Theobroma cacao]
6 Hb_000608_290 0.0696405181 - - thioredoxin f-type, putative [Ricinus communis]
7 Hb_000002_500 0.0733437523 - - PREDICTED: uncharacterized protein LOC105632094 isoform X1 [Jatropha curcas]
8 Hb_003435_030 0.0751132865 transcription factor TF Family: C2H2 nucleic acid binding protein, putative [Ricinus communis]
9 Hb_001321_010 0.0755314242 - - HIGH-CHLOROPHYLL-FLUORESCENCE 101 family protein [Populus trichocarpa]
10 Hb_001051_010 0.0790578654 - - PREDICTED: putative cyclic nucleotide-gated ion channel 15 [Jatropha curcas]
11 Hb_010136_010 0.0798079075 - - Putative receptor-like protein kinase [Glycine soja]
12 Hb_004835_020 0.0799476699 - - PREDICTED: receptor-like protein 12 [Populus euphratica]
13 Hb_002259_090 0.0807209977 - - PREDICTED: ABC transporter G family member 11 [Jatropha curcas]
14 Hb_000270_090 0.0808435064 - - nitrate transporter, putative [Ricinus communis]
15 Hb_003494_090 0.0816026134 transcription factor TF Family: MYB myb family transcription factor family protein [Populus trichocarpa]
16 Hb_000140_460 0.0824625286 - - PREDICTED: uncharacterized protein LOC105628417 [Jatropha curcas]
17 Hb_004994_030 0.0844255192 transcription factor TF Family: HB PREDICTED: homeobox-leucine zipper protein ANTHOCYANINLESS 2 [Jatropha curcas]
18 Hb_102179_010 0.0847434516 - - protein binding protein, putative [Ricinus communis]
19 Hb_001942_010 0.087484882 - - hypothetical protein JCGZ_20930 [Jatropha curcas]
20 Hb_012395_090 0.0884508134 - - PREDICTED: protein PROTON GRADIENT REGULATION 5, chloroplastic [Jatropha curcas]

Gene co-expression network

sample Hb_018591_020 Hb_018591_020 Hb_002007_220 Hb_002007_220 Hb_018591_020--Hb_002007_220 Hb_000046_120 Hb_000046_120 Hb_018591_020--Hb_000046_120 Hb_033363_040 Hb_033363_040 Hb_018591_020--Hb_033363_040 Hb_025557_060 Hb_025557_060 Hb_018591_020--Hb_025557_060 Hb_000608_290 Hb_000608_290 Hb_018591_020--Hb_000608_290 Hb_000002_500 Hb_000002_500 Hb_018591_020--Hb_000002_500 Hb_000155_020 Hb_000155_020 Hb_002007_220--Hb_000155_020 Hb_002007_220--Hb_033363_040 Hb_003494_090 Hb_003494_090 Hb_002007_220--Hb_003494_090 Hb_000270_090 Hb_000270_090 Hb_002007_220--Hb_000270_090 Hb_001321_010 Hb_001321_010 Hb_002007_220--Hb_001321_010 Hb_003435_030 Hb_003435_030 Hb_000046_120--Hb_003435_030 Hb_001942_010 Hb_001942_010 Hb_000046_120--Hb_001942_010 Hb_000046_120--Hb_000002_500 Hb_060253_010 Hb_060253_010 Hb_000046_120--Hb_060253_010 Hb_012395_090 Hb_012395_090 Hb_000046_120--Hb_012395_090 Hb_003025_160 Hb_003025_160 Hb_033363_040--Hb_003025_160 Hb_004970_060 Hb_004970_060 Hb_033363_040--Hb_004970_060 Hb_002259_090 Hb_002259_090 Hb_033363_040--Hb_002259_090 Hb_033363_040--Hb_003494_090 Hb_096224_050 Hb_096224_050 Hb_025557_060--Hb_096224_050 Hb_004979_070 Hb_004979_070 Hb_025557_060--Hb_004979_070 Hb_007904_110 Hb_007904_110 Hb_025557_060--Hb_007904_110 Hb_001699_140 Hb_001699_140 Hb_025557_060--Hb_001699_140 Hb_119600_030 Hb_119600_030 Hb_025557_060--Hb_119600_030 Hb_001051_010 Hb_001051_010 Hb_000608_290--Hb_001051_010 Hb_001248_070 Hb_001248_070 Hb_000608_290--Hb_001248_070 Hb_002407_090 Hb_002407_090 Hb_000608_290--Hb_002407_090 Hb_002073_150 Hb_002073_150 Hb_000608_290--Hb_002073_150 Hb_011104_020 Hb_011104_020 Hb_000608_290--Hb_011104_020 Hb_001115_070 Hb_001115_070 Hb_000002_500--Hb_001115_070 Hb_002284_160 Hb_002284_160 Hb_000002_500--Hb_002284_160 Hb_102179_010 Hb_102179_010 Hb_000002_500--Hb_102179_010 Hb_000002_500--Hb_003435_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.256693 39.4766 149.497 101.853 0.0929084 0.705964
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.218183 0.128745 0.323882 8.87706 221.883

CAGE analysis