Hb_001321_010

Information

Type -
Description -
Location Contig1321: 14524-20670
Sequence    

Annotation

kegg
ID pop:POPTR_0018s06210g
description POPTRDRAFT_578419; HIGH-CHLOROPHYLL-FLUORESCENCE 101 family protein
nr
ID XP_002324970.2
description HIGH-CHLOROPHYLL-FLUORESCENCE 101 family protein [Populus trichocarpa]
swissprot
ID Q0JJS8
description Fe-S cluster assembly factor HCF101, chloroplastic OS=Oryza sativa subsp. japonica GN=HCF101 PE=3 SV=3
trembl
ID B9ILJ0
description HIGH-CHLOROPHYLL-FLUORESCENCE 101 family protein OS=Populus trichocarpa GN=POPTR_0018s06210g PE=4 SV=2
Gene Ontology
ID GO:0009570
description fe-s cluster assembly factor chloroplastic

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_09253: 14560-20500 , PASA_asmbl_09254: 17347-17567
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001321_010 0.0 - - HIGH-CHLOROPHYLL-FLUORESCENCE 101 family protein [Populus trichocarpa]
2 Hb_000270_090 0.0354122285 - - nitrate transporter, putative [Ricinus communis]
3 Hb_004994_030 0.0469457218 transcription factor TF Family: HB PREDICTED: homeobox-leucine zipper protein ANTHOCYANINLESS 2 [Jatropha curcas]
4 Hb_011104_020 0.0589406697 - - PREDICTED: ABC transporter B family member 2-like [Jatropha curcas]
5 Hb_002007_220 0.073958946 - - PREDICTED: signal recognition particle 43 kDa protein, chloroplastic [Jatropha curcas]
6 Hb_018591_020 0.0755314242 - - Ribulose bisphosphate carboxylase/oxygenase activase 1, chloroplast precursor, putative [Ricinus communis]
7 Hb_002407_090 0.0769744658 - - hypothetical protein JCGZ_00747 [Jatropha curcas]
8 Hb_003937_010 0.0805492977 - - hypothetical protein JCGZ_20930 [Jatropha curcas]
9 Hb_000155_020 0.0823952294 - - PREDICTED: triose phosphate/phosphate translocator TPT, chloroplastic isoform X1 [Jatropha curcas]
10 Hb_001699_140 0.0835887015 - - PREDICTED: ferredoxin--NADP reductase, leaf isozyme, chloroplastic [Jatropha curcas]
11 Hb_004017_030 0.0851145309 - - PREDICTED: 2-hydroxyisoflavanone dehydratase-like [Jatropha curcas]
12 Hb_002073_150 0.0864275822 transcription factor TF Family: MYB-related PREDICTED: transcription factor MYB1R1 [Jatropha curcas]
13 Hb_000608_290 0.0873619088 - - thioredoxin f-type, putative [Ricinus communis]
14 Hb_007718_030 0.0876826453 - - leucine-rich repeat receptor protein kinase exs precursor, putative [Ricinus communis]
15 Hb_063405_010 0.0899981232 - - PREDICTED: probable terpene synthase 3 [Jatropha curcas]
16 Hb_010136_010 0.0919826841 - - Putative receptor-like protein kinase [Glycine soja]
17 Hb_000483_430 0.0924719443 - - -
18 Hb_001051_010 0.0925328182 - - PREDICTED: putative cyclic nucleotide-gated ion channel 15 [Jatropha curcas]
19 Hb_012389_010 0.0933027665 - - hypothetical protein POPTR_0018s11820g [Populus trichocarpa]
20 Hb_000705_010 0.0936706961 - - hypothetical protein CICLE_v10027296mg [Citrus clementina]

Gene co-expression network

sample Hb_001321_010 Hb_001321_010 Hb_000270_090 Hb_000270_090 Hb_001321_010--Hb_000270_090 Hb_004994_030 Hb_004994_030 Hb_001321_010--Hb_004994_030 Hb_011104_020 Hb_011104_020 Hb_001321_010--Hb_011104_020 Hb_002007_220 Hb_002007_220 Hb_001321_010--Hb_002007_220 Hb_018591_020 Hb_018591_020 Hb_001321_010--Hb_018591_020 Hb_002407_090 Hb_002407_090 Hb_001321_010--Hb_002407_090 Hb_000270_090--Hb_004994_030 Hb_000270_090--Hb_011104_020 Hb_001699_140 Hb_001699_140 Hb_000270_090--Hb_001699_140 Hb_000270_090--Hb_002007_220 Hb_000270_090--Hb_002407_090 Hb_003937_010 Hb_003937_010 Hb_004994_030--Hb_003937_010 Hb_004994_030--Hb_011104_020 Hb_012389_010 Hb_012389_010 Hb_004994_030--Hb_012389_010 Hb_002073_150 Hb_002073_150 Hb_004994_030--Hb_002073_150 Hb_011104_020--Hb_002073_150 Hb_000483_430 Hb_000483_430 Hb_011104_020--Hb_000483_430 Hb_011104_020--Hb_012389_010 Hb_002007_220--Hb_018591_020 Hb_000155_020 Hb_000155_020 Hb_002007_220--Hb_000155_020 Hb_033363_040 Hb_033363_040 Hb_002007_220--Hb_033363_040 Hb_003494_090 Hb_003494_090 Hb_002007_220--Hb_003494_090 Hb_000046_120 Hb_000046_120 Hb_018591_020--Hb_000046_120 Hb_018591_020--Hb_033363_040 Hb_025557_060 Hb_025557_060 Hb_018591_020--Hb_025557_060 Hb_000608_290 Hb_000608_290 Hb_018591_020--Hb_000608_290 Hb_000002_500 Hb_000002_500 Hb_018591_020--Hb_000002_500 Hb_046739_010 Hb_046739_010 Hb_002407_090--Hb_046739_010 Hb_002407_090--Hb_000608_290 Hb_011028_030 Hb_011028_030 Hb_002407_090--Hb_011028_030 Hb_002407_090--Hb_011104_020 Hb_000373_010 Hb_000373_010 Hb_002407_090--Hb_000373_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0194741 13.1513 54.9902 23.5084 0.0188657 0.060468
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0663796 0 0.231213 4.59145 71.711

CAGE analysis