Hb_000483_430

Information

Type -
Description -
Location Contig483: 380449-381673
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 019_M01.ab1: 380345-381038 , 023_K13.ab1: 380345-380941 , 027_N24.ab1: 380345-381131 , 028_D09.ab1: 380345-381112 , 033_C06.ab1: 380371-380904 , 036_K19.ab1: 380345-381109 , 040_F01.ab1: 380345-381043

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000483_430 0.0 - - -
2 Hb_011104_020 0.0527526795 - - PREDICTED: ABC transporter B family member 2-like [Jatropha curcas]
3 Hb_002073_150 0.0662189221 transcription factor TF Family: MYB-related PREDICTED: transcription factor MYB1R1 [Jatropha curcas]
4 Hb_012389_010 0.0701084244 - - hypothetical protein POPTR_0018s11820g [Populus trichocarpa]
5 Hb_000041_210 0.0798775756 - - PREDICTED: cysteine-rich receptor-like protein kinase 42 [Jatropha curcas]
6 Hb_004994_030 0.0823106973 transcription factor TF Family: HB PREDICTED: homeobox-leucine zipper protein ANTHOCYANINLESS 2 [Jatropha curcas]
7 Hb_000023_130 0.0869987164 - - Metal-nicotianamine transporter YSL1 [Glycine soja]
8 Hb_000675_010 0.0882283548 - - PREDICTED: cytokinin dehydrogenase 7 [Jatropha curcas]
9 Hb_004946_010 0.0888350528 - - hypothetical protein POPTR_0013s035502g, partial [Populus trichocarpa]
10 Hb_001321_010 0.0924719443 - - HIGH-CHLOROPHYLL-FLUORESCENCE 101 family protein [Populus trichocarpa]
11 Hb_000270_090 0.0947897727 - - nitrate transporter, putative [Ricinus communis]
12 Hb_001248_070 0.0958729886 - - PREDICTED: probable polyamine transporter At3g19553 [Jatropha curcas]
13 Hb_078582_010 0.1001104081 - - hypothetical protein POPTR_0005s01620g [Populus trichocarpa]
14 Hb_000968_010 0.1024368801 - - PREDICTED: glutamate receptor 3.7 isoform X1 [Jatropha curcas]
15 Hb_000239_050 0.1032820181 - - PREDICTED: cyclin-D5-1-like [Jatropha curcas]
16 Hb_131876_010 0.1034412917 transcription factor TF Family: MYB PREDICTED: myb-related protein 308-like isoform X1 [Jatropha curcas]
17 Hb_000705_010 0.1069775975 - - hypothetical protein CICLE_v10027296mg [Citrus clementina]
18 Hb_003937_010 0.1083844295 - - hypothetical protein JCGZ_20930 [Jatropha curcas]
19 Hb_008143_010 0.108703599 - - PREDICTED: wall-associated receptor kinase-like 22 [Jatropha curcas]
20 Hb_067558_010 0.1087884288 - - hypothetical protein JCGZ_06105 [Jatropha curcas]

Gene co-expression network

sample Hb_000483_430 Hb_000483_430 Hb_011104_020 Hb_011104_020 Hb_000483_430--Hb_011104_020 Hb_002073_150 Hb_002073_150 Hb_000483_430--Hb_002073_150 Hb_012389_010 Hb_012389_010 Hb_000483_430--Hb_012389_010 Hb_000041_210 Hb_000041_210 Hb_000483_430--Hb_000041_210 Hb_004994_030 Hb_004994_030 Hb_000483_430--Hb_004994_030 Hb_000023_130 Hb_000023_130 Hb_000483_430--Hb_000023_130 Hb_011104_020--Hb_002073_150 Hb_001321_010 Hb_001321_010 Hb_011104_020--Hb_001321_010 Hb_000270_090 Hb_000270_090 Hb_011104_020--Hb_000270_090 Hb_011104_020--Hb_004994_030 Hb_011104_020--Hb_012389_010 Hb_002073_150--Hb_012389_010 Hb_001248_070 Hb_001248_070 Hb_002073_150--Hb_001248_070 Hb_131876_010 Hb_131876_010 Hb_002073_150--Hb_131876_010 Hb_069696_020 Hb_069696_020 Hb_002073_150--Hb_069696_020 Hb_012389_010--Hb_000041_210 Hb_012389_010--Hb_004994_030 Hb_012389_010--Hb_131876_010 Hb_000675_010 Hb_000675_010 Hb_012389_010--Hb_000675_010 Hb_067558_010 Hb_067558_010 Hb_000041_210--Hb_067558_010 Hb_000041_210--Hb_000675_010 Hb_000041_210--Hb_131876_010 Hb_000239_050 Hb_000239_050 Hb_000041_210--Hb_000239_050 Hb_004994_030--Hb_000270_090 Hb_004994_030--Hb_001321_010 Hb_003937_010 Hb_003937_010 Hb_004994_030--Hb_003937_010 Hb_004994_030--Hb_002073_150 Hb_000759_040 Hb_000759_040 Hb_000023_130--Hb_000759_040 Hb_001051_010 Hb_001051_010 Hb_000023_130--Hb_001051_010 Hb_132356_010 Hb_132356_010 Hb_000023_130--Hb_132356_010 Hb_009788_020 Hb_009788_020 Hb_000023_130--Hb_009788_020 Hb_000037_200 Hb_000037_200 Hb_000023_130--Hb_000037_200 Hb_001629_120 Hb_001629_120 Hb_000023_130--Hb_001629_120
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 1.52229 7.19892 3.06791 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 1.58818 9.47446

CAGE analysis