Hb_000037_200

Information

Type -
Description -
Location Contig37: 379043-382250
Sequence    

Annotation

kegg
ID rcu:RCOM_0408340
description RNA binding protein, putative
nr
ID XP_002534335.1
description RNA binding protein, putative [Ricinus communis]
swissprot
ID Q9SJ41
description Zinc finger CCCH domain-containing protein 18 OS=Arabidopsis thaliana GN=At2g05160 PE=2 SV=1
trembl
ID B9T7W6
description RNA binding protein, putative OS=Ricinus communis GN=RCOM_0408340 PE=4 SV=1
Gene Ontology
ID GO:0000166
description zinc finger ccch domain-containing protein 18-like isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_38020: 379036-379488
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000037_200 0.0 - - RNA binding protein, putative [Ricinus communis]
2 Hb_000185_170 0.0693714087 - - ATP binding protein, putative [Ricinus communis]
3 Hb_000062_050 0.0768243977 - - protein binding protein, putative [Ricinus communis]
4 Hb_078582_010 0.0845253362 - - hypothetical protein POPTR_0005s01620g [Populus trichocarpa]
5 Hb_000023_130 0.0848528325 - - Metal-nicotianamine transporter YSL1 [Glycine soja]
6 Hb_000987_020 0.088556211 - - PREDICTED: protein trichome birefringence-like 35 [Jatropha curcas]
7 Hb_002890_160 0.0960122642 - - PREDICTED: protein root UVB sensitive 6 isoform X1 [Jatropha curcas]
8 Hb_000265_170 0.0963674581 desease resistance Gene Name: NB-ARC PREDICTED: disease resistance protein RPM1-like isoform X1 [Populus euphratica]
9 Hb_006478_050 0.1005679153 - - PREDICTED: serine/threonine-protein kinase HT1 isoform X1 [Jatropha curcas]
10 Hb_070136_010 0.1019611922 - - TRANSPARENT TESTA 12 protein, putative [Ricinus communis]
11 Hb_000759_040 0.1024521298 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase At1g34300 [Jatropha curcas]
12 Hb_001629_120 0.1045201677 desease resistance Gene Name: NB-ARC PREDICTED: probable disease resistance protein At4g27220 isoform X2 [Populus euphratica]
13 Hb_002030_090 0.1077124311 - - PREDICTED: protein TRANSPARENT TESTA 12-like [Jatropha curcas]
14 Hb_001579_060 0.1088573035 - - carbonic anhydrase, putative [Ricinus communis]
15 Hb_002078_320 0.109943013 - - PREDICTED: glucuronoxylan 4-O-methyltransferase 1 [Jatropha curcas]
16 Hb_003119_130 0.1117920213 - - hypothetical protein POPTR_0017s07770g [Populus trichocarpa]
17 Hb_000697_020 0.1121474658 - - Zinc-binding dehydrogenase family protein isoform 1 [Theobroma cacao]
18 Hb_132356_010 0.1136991704 - - receptor serine/threonine kinase, putative [Ricinus communis]
19 Hb_000483_430 0.1156480089 - - -
20 Hb_004855_080 0.1164352478 - - hypothetical protein JCGZ_25039 [Jatropha curcas]

Gene co-expression network

sample Hb_000037_200 Hb_000037_200 Hb_000185_170 Hb_000185_170 Hb_000037_200--Hb_000185_170 Hb_000062_050 Hb_000062_050 Hb_000037_200--Hb_000062_050 Hb_078582_010 Hb_078582_010 Hb_000037_200--Hb_078582_010 Hb_000023_130 Hb_000023_130 Hb_000037_200--Hb_000023_130 Hb_000987_020 Hb_000987_020 Hb_000037_200--Hb_000987_020 Hb_002890_160 Hb_002890_160 Hb_000037_200--Hb_002890_160 Hb_070136_010 Hb_070136_010 Hb_000185_170--Hb_070136_010 Hb_002078_320 Hb_002078_320 Hb_000185_170--Hb_002078_320 Hb_000185_170--Hb_000987_020 Hb_001629_120 Hb_001629_120 Hb_000185_170--Hb_001629_120 Hb_000265_170 Hb_000265_170 Hb_000185_170--Hb_000265_170 Hb_000062_050--Hb_000185_170 Hb_000062_050--Hb_000987_020 Hb_000062_050--Hb_070136_010 Hb_001266_130 Hb_001266_130 Hb_000062_050--Hb_001266_130 Hb_000694_050 Hb_000694_050 Hb_000062_050--Hb_000694_050 Hb_003453_060 Hb_003453_060 Hb_078582_010--Hb_003453_060 Hb_000260_750 Hb_000260_750 Hb_078582_010--Hb_000260_750 Hb_000759_040 Hb_000759_040 Hb_078582_010--Hb_000759_040 Hb_005575_010 Hb_005575_010 Hb_078582_010--Hb_005575_010 Hb_078582_010--Hb_000987_020 Hb_000023_130--Hb_000759_040 Hb_001051_010 Hb_001051_010 Hb_000023_130--Hb_001051_010 Hb_132356_010 Hb_132356_010 Hb_000023_130--Hb_132356_010 Hb_009788_020 Hb_009788_020 Hb_000023_130--Hb_009788_020 Hb_000023_130--Hb_001629_120 Hb_001579_060 Hb_001579_060 Hb_000987_020--Hb_001579_060 Hb_000987_020--Hb_002078_320 Hb_000901_010 Hb_000901_010 Hb_000987_020--Hb_000901_010 Hb_000987_020--Hb_000694_050 Hb_003531_050 Hb_003531_050 Hb_002890_160--Hb_003531_050 Hb_001352_030 Hb_001352_030 Hb_002890_160--Hb_001352_030 Hb_003020_070 Hb_003020_070 Hb_002890_160--Hb_003020_070 Hb_010534_040 Hb_010534_040 Hb_002890_160--Hb_010534_040 Hb_000922_160 Hb_000922_160 Hb_002890_160--Hb_000922_160
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0447255 1.43673 4.50258 1.90203 0 0.0304823
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 1.09181 4.04599

CAGE analysis