Hb_078582_010

Information

Type -
Description -
Location Contig78582: 17-424
Sequence    

Annotation

kegg
ID pop:POPTR_0005s01620g
description hypothetical protein
nr
ID XP_006382383.1
description hypothetical protein POPTR_0005s01620g [Populus trichocarpa]
swissprot
ID Q9SHI3
description Receptor-like protein 2 OS=Arabidopsis thaliana GN=RLP2 PE=2 SV=1
trembl
ID U5G9T0
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0005s01620g PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_078582_010 0.0 - - hypothetical protein POPTR_0005s01620g [Populus trichocarpa]
2 Hb_003453_060 0.0714883109 - - PREDICTED: nudix hydrolase 13, mitochondrial [Jatropha curcas]
3 Hb_000037_200 0.0845253362 - - RNA binding protein, putative [Ricinus communis]
4 Hb_000260_750 0.0907857895 - - PREDICTED: anthocyanidin 3-O-glucosyltransferase 7-like [Jatropha curcas]
5 Hb_000759_040 0.0928998255 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase At1g34300 [Jatropha curcas]
6 Hb_005575_010 0.0935835646 - - hypothetical protein POPTR_0004s02560g [Populus trichocarpa]
7 Hb_000987_020 0.0965174622 - - PREDICTED: protein trichome birefringence-like 35 [Jatropha curcas]
8 Hb_003119_130 0.097242901 - - hypothetical protein POPTR_0017s07770g [Populus trichocarpa]
9 Hb_000483_430 0.1001104081 - - -
10 Hb_000023_130 0.1032438782 - - Metal-nicotianamine transporter YSL1 [Glycine soja]
11 Hb_000185_170 0.1050639471 - - ATP binding protein, putative [Ricinus communis]
12 Hb_004855_080 0.1061168551 - - hypothetical protein JCGZ_25039 [Jatropha curcas]
13 Hb_000947_010 0.1075576393 desease resistance Gene Name: NB-ARC PREDICTED: putative disease resistance protein RGA4 [Jatropha curcas]
14 Hb_003043_130 0.1108352346 transcription factor TF Family: ERF PREDICTED: ethylene-responsive transcription factor CRF2-like [Jatropha curcas]
15 Hb_004946_010 0.1125789257 - - hypothetical protein POPTR_0013s035502g, partial [Populus trichocarpa]
16 Hb_002030_090 0.1129415818 - - PREDICTED: protein TRANSPARENT TESTA 12-like [Jatropha curcas]
17 Hb_009102_010 0.1153293613 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
18 Hb_000901_010 0.1155507419 - - PREDICTED: putative G-type lectin S-receptor-like serine/threonine-protein kinase At1g61610 [Jatropha curcas]
19 Hb_002078_320 0.1189621573 - - PREDICTED: glucuronoxylan 4-O-methyltransferase 1 [Jatropha curcas]
20 Hb_132356_010 0.1239089857 - - receptor serine/threonine kinase, putative [Ricinus communis]

Gene co-expression network

sample Hb_078582_010 Hb_078582_010 Hb_003453_060 Hb_003453_060 Hb_078582_010--Hb_003453_060 Hb_000037_200 Hb_000037_200 Hb_078582_010--Hb_000037_200 Hb_000260_750 Hb_000260_750 Hb_078582_010--Hb_000260_750 Hb_000759_040 Hb_000759_040 Hb_078582_010--Hb_000759_040 Hb_005575_010 Hb_005575_010 Hb_078582_010--Hb_005575_010 Hb_000987_020 Hb_000987_020 Hb_078582_010--Hb_000987_020 Hb_003453_060--Hb_005575_010 Hb_002025_290 Hb_002025_290 Hb_003453_060--Hb_002025_290 Hb_003043_130 Hb_003043_130 Hb_003453_060--Hb_003043_130 Hb_001544_060 Hb_001544_060 Hb_003453_060--Hb_001544_060 Hb_003119_130 Hb_003119_130 Hb_003453_060--Hb_003119_130 Hb_000185_170 Hb_000185_170 Hb_000037_200--Hb_000185_170 Hb_000062_050 Hb_000062_050 Hb_000037_200--Hb_000062_050 Hb_000023_130 Hb_000023_130 Hb_000037_200--Hb_000023_130 Hb_000037_200--Hb_000987_020 Hb_002890_160 Hb_002890_160 Hb_000037_200--Hb_002890_160 Hb_000880_040 Hb_000880_040 Hb_000260_750--Hb_000880_040 Hb_004324_320 Hb_004324_320 Hb_000260_750--Hb_004324_320 Hb_009102_010 Hb_009102_010 Hb_000260_750--Hb_009102_010 Hb_002601_140 Hb_002601_140 Hb_000260_750--Hb_002601_140 Hb_002078_320 Hb_002078_320 Hb_000260_750--Hb_002078_320 Hb_005892_050 Hb_005892_050 Hb_000759_040--Hb_005892_050 Hb_004602_010 Hb_004602_010 Hb_000759_040--Hb_004602_010 Hb_000759_040--Hb_000023_130 Hb_004855_080 Hb_004855_080 Hb_000759_040--Hb_004855_080 Hb_001488_420 Hb_001488_420 Hb_000759_040--Hb_001488_420 Hb_006618_110 Hb_006618_110 Hb_000759_040--Hb_006618_110 Hb_000947_010 Hb_000947_010 Hb_005575_010--Hb_000947_010 Hb_005575_010--Hb_003043_130 Hb_005575_010--Hb_002025_290 Hb_005575_010--Hb_003119_130 Hb_001579_060 Hb_001579_060 Hb_000987_020--Hb_001579_060 Hb_000987_020--Hb_002078_320 Hb_000901_010 Hb_000901_010 Hb_000987_020--Hb_000901_010 Hb_000987_020--Hb_000185_170 Hb_000694_050 Hb_000694_050 Hb_000987_020--Hb_000694_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.328846 1.5732 0.510401 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.450415 1.33334

CAGE analysis