Hb_002025_290

Information

Type transcription factor
Description TF Family: G2-like
Location Contig2025: 223451-227122
Sequence    

Annotation

kegg
ID rcu:RCOM_0775800
description hypothetical protein
nr
ID XP_002521884.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID Q700D9
description Putative Myb family transcription factor At1g14600 OS=Arabidopsis thaliana GN=At1g14600 PE=2 SV=2
trembl
ID B9S7B5
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0775800 PE=4 SV=1
Gene Ontology
ID GO:0003677
description myb family transcription factor at1g14600

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_20593: 225644-225902 , PASA_asmbl_20594: 223432-226866 , PASA_asmbl_20595: 226897-227074
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002025_290 0.0 transcription factor TF Family: G2-like conserved hypothetical protein [Ricinus communis]
2 Hb_001285_020 0.0742893478 - - UDP-glucosyltransferase, putative [Ricinus communis]
3 Hb_003453_060 0.0838746321 - - PREDICTED: nudix hydrolase 13, mitochondrial [Jatropha curcas]
4 Hb_005575_010 0.0935061162 - - hypothetical protein POPTR_0004s02560g [Populus trichocarpa]
5 Hb_009102_010 0.11365571 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
6 Hb_003050_010 0.1182161585 - - PREDICTED: VQ motif-containing protein 1-like [Jatropha curcas]
7 Hb_001544_060 0.1225306125 transcription factor TF Family: MYB PREDICTED: transcription repressor MYB4 isoform X2 [Jatropha curcas]
8 Hb_000252_240 0.12690248 - - PREDICTED: protein TRANSPARENT TESTA 12-like isoform X2 [Gossypium raimondii]
9 Hb_078582_010 0.1325599672 - - hypothetical protein POPTR_0005s01620g [Populus trichocarpa]
10 Hb_028707_120 0.1340161824 - - PREDICTED: uncharacterized protein LOC105645799 isoform X2 [Jatropha curcas]
11 Hb_000300_070 0.1368230993 transcription factor TF Family: MYB r2r3-myb transcription factor, putative [Ricinus communis]
12 Hb_000947_010 0.1380403128 desease resistance Gene Name: NB-ARC PREDICTED: putative disease resistance protein RGA4 [Jatropha curcas]
13 Hb_003119_130 0.1442268009 - - hypothetical protein POPTR_0017s07770g [Populus trichocarpa]
14 Hb_000175_200 0.1458513532 - - conserved hypothetical protein [Ricinus communis]
15 Hb_000445_310 0.1461299819 - - hypothetical protein B456_011G218000 [Gossypium raimondii]
16 Hb_003043_130 0.1467460435 transcription factor TF Family: ERF PREDICTED: ethylene-responsive transcription factor CRF2-like [Jatropha curcas]
17 Hb_000163_140 0.1521464544 - - PREDICTED: caffeoylshikimate esterase [Jatropha curcas]
18 Hb_007850_100 0.1526442429 - - PREDICTED: uncharacterized protein LOC105640661 [Jatropha curcas]
19 Hb_009693_010 0.1549253937 - - PREDICTED: proline-rich receptor-like protein kinase PERK15 [Gossypium raimondii]
20 Hb_005513_020 0.1555465637 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase RLK1 [Jatropha curcas]

Gene co-expression network

sample Hb_002025_290 Hb_002025_290 Hb_001285_020 Hb_001285_020 Hb_002025_290--Hb_001285_020 Hb_003453_060 Hb_003453_060 Hb_002025_290--Hb_003453_060 Hb_005575_010 Hb_005575_010 Hb_002025_290--Hb_005575_010 Hb_009102_010 Hb_009102_010 Hb_002025_290--Hb_009102_010 Hb_003050_010 Hb_003050_010 Hb_002025_290--Hb_003050_010 Hb_001544_060 Hb_001544_060 Hb_002025_290--Hb_001544_060 Hb_001285_020--Hb_009102_010 Hb_001285_020--Hb_003050_010 Hb_001285_020--Hb_005575_010 Hb_001285_020--Hb_003453_060 Hb_000500_360 Hb_000500_360 Hb_001285_020--Hb_000500_360 Hb_003453_060--Hb_005575_010 Hb_078582_010 Hb_078582_010 Hb_003453_060--Hb_078582_010 Hb_003043_130 Hb_003043_130 Hb_003453_060--Hb_003043_130 Hb_003453_060--Hb_001544_060 Hb_003119_130 Hb_003119_130 Hb_003453_060--Hb_003119_130 Hb_000947_010 Hb_000947_010 Hb_005575_010--Hb_000947_010 Hb_005575_010--Hb_003043_130 Hb_005575_010--Hb_078582_010 Hb_005575_010--Hb_003119_130 Hb_000260_750 Hb_000260_750 Hb_009102_010--Hb_000260_750 Hb_009102_010--Hb_000500_360 Hb_000880_040 Hb_000880_040 Hb_009102_010--Hb_000880_040 Hb_009102_010--Hb_078582_010 Hb_000987_160 Hb_000987_160 Hb_003050_010--Hb_000987_160 Hb_000334_160 Hb_000334_160 Hb_003050_010--Hb_000334_160 Hb_003050_010--Hb_009102_010 Hb_000039_190 Hb_000039_190 Hb_003050_010--Hb_000039_190 Hb_000252_240 Hb_000252_240 Hb_001544_060--Hb_000252_240 Hb_000445_310 Hb_000445_310 Hb_001544_060--Hb_000445_310 Hb_001898_100 Hb_001898_100 Hb_001544_060--Hb_001898_100 Hb_003337_020 Hb_003337_020 Hb_001544_060--Hb_003337_020 Hb_001638_190 Hb_001638_190 Hb_001544_060--Hb_001638_190
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 2.0116 19.1149 2.29454 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.1088 0 0 5.48414 12.19

CAGE analysis