Hb_001638_190

Information

Type -
Description -
Location Contig1638: 144104-147054
Sequence    

Annotation

kegg
ID pop:POPTR_0002s17930g
description POPTRDRAFT_644646; hypothetical protein
nr
ID XP_012083112.1
description PREDICTED: protein IQ-DOMAIN 1-like isoform X1 [Jatropha curcas]
swissprot
ID Q8LPG9
description Protein IQ-DOMAIN 14 OS=Arabidopsis thaliana GN=IQD14 PE=1 SV=1
trembl
ID A0A067K9D1
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_14195 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_15005: 144139-146547 , PASA_asmbl_15006: 145853-146547
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001638_190 0.0 - - PREDICTED: protein IQ-DOMAIN 1-like isoform X1 [Jatropha curcas]
2 Hb_000345_400 0.0714902139 - - conserved hypothetical protein [Ricinus communis]
3 Hb_000188_070 0.0876746363 - - calcineurin-like phosphoesterase [Manihot esculenta]
4 Hb_000692_060 0.0917054339 - - calcium-dependent protein kinase, putative [Ricinus communis]
5 Hb_001958_030 0.0935155788 - - PREDICTED: protein NUCLEAR FUSION DEFECTIVE 4-like [Jatropha curcas]
6 Hb_001655_080 0.1001080882 - - Purple acid phosphatase precursor, putative [Ricinus communis]
7 Hb_000358_160 0.102249592 - - PREDICTED: uncharacterized protein LOC105637769 isoform X1 [Jatropha curcas]
8 Hb_092516_010 0.103874417 - - hypothetical protein JCGZ_12248 [Jatropha curcas]
9 Hb_000294_020 0.103958473 - - PREDICTED: probable ADP-ribosylation factor GTPase-activating protein AGD11 [Jatropha curcas]
10 Hb_001442_050 0.104778927 - - PREDICTED: NAD(P)H-quinone oxidoreductase subunit U, chloroplastic [Jatropha curcas]
11 Hb_001544_060 0.105842913 transcription factor TF Family: MYB PREDICTED: transcription repressor MYB4 isoform X2 [Jatropha curcas]
12 Hb_007254_010 0.1109766524 - - hypothetical protein JCGZ_25214 [Jatropha curcas]
13 Hb_003453_060 0.1140341478 - - PREDICTED: nudix hydrolase 13, mitochondrial [Jatropha curcas]
14 Hb_000175_200 0.1141078908 - - conserved hypothetical protein [Ricinus communis]
15 Hb_000252_240 0.1168396985 - - PREDICTED: protein TRANSPARENT TESTA 12-like isoform X2 [Gossypium raimondii]
16 Hb_000890_170 0.117314701 - - PREDICTED: acyl-CoA-binding domain-containing protein 5 [Jatropha curcas]
17 Hb_003337_020 0.1178752526 - - PREDICTED: uncharacterized protein LOC105116455 [Populus euphratica]
18 Hb_003777_090 0.1183575058 transcription factor TF Family: Trihelix PREDICTED: trihelix transcription factor GT-2-like [Jatropha curcas]
19 Hb_033834_020 0.1185541451 - - conserved hypothetical protein [Ricinus communis]
20 Hb_003043_130 0.1216106467 transcription factor TF Family: ERF PREDICTED: ethylene-responsive transcription factor CRF2-like [Jatropha curcas]

Gene co-expression network

sample Hb_001638_190 Hb_001638_190 Hb_000345_400 Hb_000345_400 Hb_001638_190--Hb_000345_400 Hb_000188_070 Hb_000188_070 Hb_001638_190--Hb_000188_070 Hb_000692_060 Hb_000692_060 Hb_001638_190--Hb_000692_060 Hb_001958_030 Hb_001958_030 Hb_001638_190--Hb_001958_030 Hb_001655_080 Hb_001655_080 Hb_001638_190--Hb_001655_080 Hb_000358_160 Hb_000358_160 Hb_001638_190--Hb_000358_160 Hb_000294_020 Hb_000294_020 Hb_000345_400--Hb_000294_020 Hb_001442_050 Hb_001442_050 Hb_000345_400--Hb_001442_050 Hb_000345_400--Hb_000358_160 Hb_092516_010 Hb_092516_010 Hb_000345_400--Hb_092516_010 Hb_110266_010 Hb_110266_010 Hb_000345_400--Hb_110266_010 Hb_033834_020 Hb_033834_020 Hb_000188_070--Hb_033834_020 Hb_000188_070--Hb_000692_060 Hb_000188_070--Hb_001958_030 Hb_007254_010 Hb_007254_010 Hb_000188_070--Hb_007254_010 Hb_000928_100 Hb_000928_100 Hb_000188_070--Hb_000928_100 Hb_000692_060--Hb_007254_010 Hb_000692_060--Hb_033834_020 Hb_000692_060--Hb_001958_030 Hb_000236_130 Hb_000236_130 Hb_000692_060--Hb_000236_130 Hb_022167_010 Hb_022167_010 Hb_000692_060--Hb_022167_010 Hb_002710_040 Hb_002710_040 Hb_001958_030--Hb_002710_040 Hb_001958_030--Hb_033834_020 Hb_003387_010 Hb_003387_010 Hb_001958_030--Hb_003387_010 Hb_001655_080--Hb_000358_160 Hb_001655_080--Hb_092516_010 Hb_027684_010 Hb_027684_010 Hb_001655_080--Hb_027684_010 Hb_046590_010 Hb_046590_010 Hb_001655_080--Hb_046590_010 Hb_001269_060 Hb_001269_060 Hb_001655_080--Hb_001269_060 Hb_000358_160--Hb_092516_010 Hb_000358_160--Hb_027684_010 Hb_021443_060 Hb_021443_060 Hb_000358_160--Hb_021443_060 Hb_000313_250 Hb_000313_250 Hb_000358_160--Hb_000313_250
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.115048 4.88909 37.4395 7.59518 0.0638824 0.0461576
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.280753 0.265101 0.0280449 3.55728 19.7294

CAGE analysis