Hb_000928_100

Information

Type -
Description -
Location Contig928: 62619-67674
Sequence    

Annotation

kegg
ID rcu:RCOM_1517450
description RNA polymerase sigma factor rpoD, putative
nr
ID XP_002524027.1
description RNA polymerase sigma factor rpoD, putative [Ricinus communis]
swissprot
ID O24629
description RNA polymerase sigma factor sigA OS=Arabidopsis thaliana GN=SIGA PE=1 SV=1
trembl
ID B9SDF8
description RNA polymerase sigma factor rpoD, putative OS=Ricinus communis GN=RCOM_1517450 PE=4 SV=1
Gene Ontology
ID GO:0003677
description rna polymerase sigma factor siga

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_62753: 62844-67878 , PASA_asmbl_62754: 62869-67881 , PASA_asmbl_62755: 68402-69427
cDNA
(Sanger)
(ID:Location)		 050_F01.ab1: 66155-67878

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000928_100 0.0 - - RNA polymerase sigma factor rpoD, putative [Ricinus communis]
2 Hb_022167_010 0.0409250793 - - Kinase, putative isoform 2 [Theobroma cacao]
3 Hb_000386_010 0.0658896766 - - conserved hypothetical protein [Ricinus communis]
4 Hb_000749_140 0.0736257443 - - PREDICTED: 2-succinylbenzoate--CoA ligase, chloroplastic/peroxisomal [Jatropha curcas]
5 Hb_000294_020 0.0741101233 - - PREDICTED: probable ADP-ribosylation factor GTPase-activating protein AGD11 [Jatropha curcas]
6 Hb_033834_020 0.0745296519 - - conserved hypothetical protein [Ricinus communis]
7 Hb_001916_110 0.077971694 - - PREDICTED: uncharacterized protein LOC105641510 [Jatropha curcas]
8 Hb_000692_060 0.0796664586 - - calcium-dependent protein kinase, putative [Ricinus communis]
9 Hb_179129_010 0.0806279246 - - hypothetical protein POPTR_0018s10470g [Populus trichocarpa]
10 Hb_004346_050 0.0816195468 - - PREDICTED: ABC transporter G family member 22 [Jatropha curcas]
11 Hb_007254_010 0.0818873455 - - hypothetical protein JCGZ_25214 [Jatropha curcas]
12 Hb_003777_090 0.0820089038 transcription factor TF Family: Trihelix PREDICTED: trihelix transcription factor GT-2-like [Jatropha curcas]
13 Hb_000236_130 0.0821099991 - - PREDICTED: protein ECERIFERUM 26 [Jatropha curcas]
14 Hb_078954_030 0.0825964204 - - conserved hypothetical protein [Ricinus communis]
15 Hb_002805_200 0.0839989874 - - PREDICTED: serine--glyoxylate aminotransferase [Nelumbo nucifera]
16 Hb_002561_040 0.0849033517 - - Photosynthetic electron transfer C [Theobroma cacao]
17 Hb_000483_470 0.088063754 - - PREDICTED: zeaxanthin epoxidase, chloroplastic-like isoform X1 [Jatropha curcas]
18 Hb_000188_070 0.0885471715 - - calcineurin-like phosphoesterase [Manihot esculenta]
19 Hb_000340_280 0.0897775773 - - conserved hypothetical protein [Ricinus communis]
20 Hb_048141_050 0.0929243002 - - hypothetical protein PRUPE_ppa009153mg [Prunus persica]

Gene co-expression network

sample Hb_000928_100 Hb_000928_100 Hb_022167_010 Hb_022167_010 Hb_000928_100--Hb_022167_010 Hb_000386_010 Hb_000386_010 Hb_000928_100--Hb_000386_010 Hb_000749_140 Hb_000749_140 Hb_000928_100--Hb_000749_140 Hb_000294_020 Hb_000294_020 Hb_000928_100--Hb_000294_020 Hb_033834_020 Hb_033834_020 Hb_000928_100--Hb_033834_020 Hb_001916_110 Hb_001916_110 Hb_000928_100--Hb_001916_110 Hb_000236_130 Hb_000236_130 Hb_022167_010--Hb_000236_130 Hb_179129_010 Hb_179129_010 Hb_022167_010--Hb_179129_010 Hb_000692_060 Hb_000692_060 Hb_022167_010--Hb_000692_060 Hb_022167_010--Hb_033834_020 Hb_004346_050 Hb_004346_050 Hb_022167_010--Hb_004346_050 Hb_005305_140 Hb_005305_140 Hb_000386_010--Hb_005305_140 Hb_004109_140 Hb_004109_140 Hb_000386_010--Hb_004109_140 Hb_000386_010--Hb_022167_010 Hb_005888_060 Hb_005888_060 Hb_000386_010--Hb_005888_060 Hb_001662_090 Hb_001662_090 Hb_000386_010--Hb_001662_090 Hb_101133_030 Hb_101133_030 Hb_000749_140--Hb_101133_030 Hb_000749_140--Hb_001916_110 Hb_000340_280 Hb_000340_280 Hb_000749_140--Hb_000340_280 Hb_001233_050 Hb_001233_050 Hb_000749_140--Hb_001233_050 Hb_001942_060 Hb_001942_060 Hb_000749_140--Hb_001942_060 Hb_003777_090 Hb_003777_090 Hb_000294_020--Hb_003777_090 Hb_000483_470 Hb_000483_470 Hb_000294_020--Hb_000483_470 Hb_000294_020--Hb_000236_130 Hb_092516_010 Hb_092516_010 Hb_000294_020--Hb_092516_010 Hb_000294_020--Hb_022167_010 Hb_000188_070 Hb_000188_070 Hb_033834_020--Hb_000188_070 Hb_033834_020--Hb_000692_060 Hb_007254_010 Hb_007254_010 Hb_033834_020--Hb_007254_010 Hb_001958_030 Hb_001958_030 Hb_033834_020--Hb_001958_030 Hb_006775_100 Hb_006775_100 Hb_001916_110--Hb_006775_100 Hb_002805_200 Hb_002805_200 Hb_001916_110--Hb_002805_200 Hb_001916_110--Hb_000340_280 Hb_001916_110--Hb_101133_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.194303 13.0821 119.795 19.928 0.0910308 0.0318693
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0778393 0.0306245 0.0874033 2.23917 70.6097

CAGE analysis