Hb_005888_060

Information

Type -
Description -
Location Contig5888: 59107-60343
Sequence    

Annotation

kegg
ID pper:PRUPEppa002432m2g
description hypothetical protein
nr
ID XP_007225549.1
description hypothetical protein PRUPE_ppa002432m2g, partial [Prunus persica]
swissprot
ID Q9LSV3
description Putative wall-associated receptor kinase-like 16 OS=Arabidopsis thaliana GN=WAKL16 PE=3 SV=1
trembl
ID M5XY76
description Uncharacterized protein (Fragment) OS=Prunus persica GN=PRUPE_ppa002432m2g PE=3 SV=1
Gene Ontology
ID GO:0005622
description wall-associated receptor kinase-like 16

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_50061: 59177-59454
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005888_060 0.0 - - hypothetical protein PRUPE_ppa002432m2g, partial [Prunus persica]
2 Hb_000386_010 0.0848902976 - - conserved hypothetical protein [Ricinus communis]
3 Hb_005227_030 0.0956451425 - - PREDICTED: peptidyl-prolyl cis-trans isomerase CYP28, chloroplastic [Jatropha curcas]
4 Hb_005305_140 0.1030027111 - - unknown [Populus trichocarpa]
5 Hb_002561_040 0.1136732706 - - Photosynthetic electron transfer C [Theobroma cacao]
6 Hb_007254_010 0.1222370024 - - hypothetical protein JCGZ_25214 [Jatropha curcas]
7 Hb_005511_080 0.1241418597 - - Protein MLO, putative [Ricinus communis]
8 Hb_004109_140 0.1267560263 - - conserved hypothetical protein [Ricinus communis]
9 Hb_033834_020 0.1287992243 - - conserved hypothetical protein [Ricinus communis]
10 Hb_023904_010 0.1288548161 - - -
11 Hb_000928_100 0.129236799 - - RNA polymerase sigma factor rpoD, putative [Ricinus communis]
12 Hb_001662_090 0.1310280909 - - PREDICTED: thiosulfate sulfurtransferase 16, chloroplastic isoform X1 [Jatropha curcas]
13 Hb_065256_010 0.1317101275 - - tryptophan synthase beta chain, putative [Ricinus communis]
14 Hb_000479_340 0.1330249551 - - PREDICTED: uncharacterized protein LOC105644112 [Jatropha curcas]
15 Hb_004346_050 0.1421507243 - - PREDICTED: ABC transporter G family member 22 [Jatropha curcas]
16 Hb_022167_010 0.1441736245 - - Kinase, putative isoform 2 [Theobroma cacao]
17 Hb_000834_170 0.147216837 - - polygalacturonase, putative [Ricinus communis]
18 Hb_000483_470 0.1508733582 - - PREDICTED: zeaxanthin epoxidase, chloroplastic-like isoform X1 [Jatropha curcas]
19 Hb_006775_100 0.1521946266 - - Xylem serine proteinase 1 precursor, putative [Ricinus communis]
20 Hb_001864_050 0.1532530549 - - chloroplast oxygen-evolving enhancer protein [Manihot esculenta]

Gene co-expression network

sample Hb_005888_060 Hb_005888_060 Hb_000386_010 Hb_000386_010 Hb_005888_060--Hb_000386_010 Hb_005227_030 Hb_005227_030 Hb_005888_060--Hb_005227_030 Hb_005305_140 Hb_005305_140 Hb_005888_060--Hb_005305_140 Hb_002561_040 Hb_002561_040 Hb_005888_060--Hb_002561_040 Hb_007254_010 Hb_007254_010 Hb_005888_060--Hb_007254_010 Hb_005511_080 Hb_005511_080 Hb_005888_060--Hb_005511_080 Hb_000386_010--Hb_005305_140 Hb_000928_100 Hb_000928_100 Hb_000386_010--Hb_000928_100 Hb_004109_140 Hb_004109_140 Hb_000386_010--Hb_004109_140 Hb_022167_010 Hb_022167_010 Hb_000386_010--Hb_022167_010 Hb_001662_090 Hb_001662_090 Hb_000386_010--Hb_001662_090 Hb_005227_030--Hb_004109_140 Hb_005227_030--Hb_000386_010 Hb_005227_030--Hb_005305_140 Hb_001953_110 Hb_001953_110 Hb_005227_030--Hb_001953_110 Hb_023904_010 Hb_023904_010 Hb_005227_030--Hb_023904_010 Hb_005305_140--Hb_004109_140 Hb_001864_050 Hb_001864_050 Hb_005305_140--Hb_001864_050 Hb_002025_220 Hb_002025_220 Hb_005305_140--Hb_002025_220 Hb_005305_140--Hb_001662_090 Hb_000834_170 Hb_000834_170 Hb_005305_140--Hb_000834_170 Hb_000084_210 Hb_000084_210 Hb_002561_040--Hb_000084_210 Hb_011716_140 Hb_011716_140 Hb_002561_040--Hb_011716_140 Hb_002561_040--Hb_000928_100 Hb_002078_280 Hb_002078_280 Hb_002561_040--Hb_002078_280 Hb_002561_040--Hb_000386_010 Hb_001916_110 Hb_001916_110 Hb_002561_040--Hb_001916_110 Hb_000692_060 Hb_000692_060 Hb_007254_010--Hb_000692_060 Hb_033834_020 Hb_033834_020 Hb_007254_010--Hb_033834_020 Hb_000188_070 Hb_000188_070 Hb_007254_010--Hb_000188_070 Hb_007254_010--Hb_000928_100 Hb_007254_010--Hb_022167_010 Hb_003777_090 Hb_003777_090 Hb_007254_010--Hb_003777_090 Hb_001218_060 Hb_001218_060 Hb_005511_080--Hb_001218_060 Hb_104014_010 Hb_104014_010 Hb_005511_080--Hb_104014_010 Hb_001123_340 Hb_001123_340 Hb_005511_080--Hb_001123_340 Hb_005511_080--Hb_002561_040 Hb_065256_010 Hb_065256_010 Hb_005511_080--Hb_065256_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.117714 0.652106 0.0520504 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0.324347

CAGE analysis