Hb_000084_210

Information

Type -
Description -
Location Contig84: 182658-187260
Sequence    

Annotation

kegg
ID pop:POPTR_0016s08050g
description POPTRDRAFT_256588; hypothetical protein
nr
ID XP_002323427.2
description hypothetical protein POPTR_0016s08050g [Populus trichocarpa]
swissprot
ID O04846
description Alpha carbonic anhydrase 1, chloroplastic OS=Arabidopsis thaliana GN=ACA1 PE=1 SV=2
trembl
ID B9IIU9
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0016s08050g PE=4 SV=2
Gene Ontology
ID GO:0016829
description alpha carbonic anhydrase chloroplastic-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000084_210 0.0 - - hypothetical protein POPTR_0016s08050g [Populus trichocarpa]
2 Hb_002561_040 0.0712990684 - - Photosynthetic electron transfer C [Theobroma cacao]
3 Hb_002499_050 0.0734149795 - - receptor protein kinase, putative [Ricinus communis]
4 Hb_004627_050 0.0758941355 - - Chlorophyll a-b binding protein 6A [Morus notabilis]
5 Hb_001369_590 0.0806019609 transcription factor TF Family: MYB hypothetical protein POPTR_0015s14600g [Populus trichocarpa]
6 Hb_002259_020 0.0831402805 - - PREDICTED: uncharacterized protein LOC105646333 [Jatropha curcas]
7 Hb_011512_100 0.0834081139 - - PREDICTED: uncharacterized protein LOC105650382 isoform X1 [Jatropha curcas]
8 Hb_005365_040 0.0843744618 - - hypothetical protein JCGZ_15100 [Jatropha curcas]
9 Hb_004223_120 0.0857641401 - - PREDICTED: protein SPA, chloroplastic [Jatropha curcas]
10 Hb_000172_660 0.0883356538 - - flavonoid 3-hydroxylase, putative [Ricinus communis]
11 Hb_001942_060 0.0907477746 - - conserved hypothetical protein [Ricinus communis]
12 Hb_002078_280 0.0949809475 - - chlorophyll a/b-binding protein type II precursor [Populus trichocarpa]
13 Hb_001233_050 0.0957432461 - - Magnesium-protoporphyrin IX monomethyl ester [oxidative] cyclase, chloroplast precursor, putative [Ricinus communis]
14 Hb_002710_040 0.0963991545 - - PREDICTED: cyclin-D3-3-like [Jatropha curcas]
15 Hb_011716_140 0.0974482379 transcription factor TF Family: MYB-related PREDICTED: myb-like protein J [Jatropha curcas]
16 Hb_030565_020 0.0977244374 - - PREDICTED: protein ECERIFERUM 26 [Jatropha curcas]
17 Hb_003387_010 0.0997614226 - - PREDICTED: protein kinase PINOID 2 [Gossypium raimondii]
18 Hb_032880_010 0.1002828584 - - PREDICTED: beta-glucosidase 24-like [Jatropha curcas]
19 Hb_001166_010 0.1003493408 - - S-locus-specific glycoprotein S13 precursor, putative [Ricinus communis]
20 Hb_001671_070 0.1015158953 - - kinase, putative [Ricinus communis]

Gene co-expression network

sample Hb_000084_210 Hb_000084_210 Hb_002561_040 Hb_002561_040 Hb_000084_210--Hb_002561_040 Hb_002499_050 Hb_002499_050 Hb_000084_210--Hb_002499_050 Hb_004627_050 Hb_004627_050 Hb_000084_210--Hb_004627_050 Hb_001369_590 Hb_001369_590 Hb_000084_210--Hb_001369_590 Hb_002259_020 Hb_002259_020 Hb_000084_210--Hb_002259_020 Hb_011512_100 Hb_011512_100 Hb_000084_210--Hb_011512_100 Hb_011716_140 Hb_011716_140 Hb_002561_040--Hb_011716_140 Hb_000928_100 Hb_000928_100 Hb_002561_040--Hb_000928_100 Hb_002078_280 Hb_002078_280 Hb_002561_040--Hb_002078_280 Hb_000386_010 Hb_000386_010 Hb_002561_040--Hb_000386_010 Hb_001916_110 Hb_001916_110 Hb_002561_040--Hb_001916_110 Hb_002499_050--Hb_001369_590 Hb_006620_030 Hb_006620_030 Hb_002499_050--Hb_006620_030 Hb_000282_020 Hb_000282_020 Hb_002499_050--Hb_000282_020 Hb_005365_040 Hb_005365_040 Hb_002499_050--Hb_005365_040 Hb_048141_050 Hb_048141_050 Hb_002499_050--Hb_048141_050 Hb_004627_050--Hb_011512_100 Hb_004627_050--Hb_002259_020 Hb_004627_050--Hb_002078_280 Hb_000172_660 Hb_000172_660 Hb_004627_050--Hb_000172_660 Hb_002245_050 Hb_002245_050 Hb_004627_050--Hb_002245_050 Hb_002929_030 Hb_002929_030 Hb_004627_050--Hb_002929_030 Hb_001369_590--Hb_005365_040 Hb_002121_030 Hb_002121_030 Hb_001369_590--Hb_002121_030 Hb_001369_590--Hb_006620_030 Hb_000152_650 Hb_000152_650 Hb_001369_590--Hb_000152_650 Hb_002259_020--Hb_011512_100 Hb_030565_020 Hb_030565_020 Hb_002259_020--Hb_030565_020 Hb_004223_120 Hb_004223_120 Hb_002259_020--Hb_004223_120 Hb_002259_020--Hb_002078_280 Hb_000847_040 Hb_000847_040 Hb_002259_020--Hb_000847_040 Hb_011512_100--Hb_002078_280 Hb_011512_100--Hb_011716_140 Hb_000979_210 Hb_000979_210 Hb_011512_100--Hb_000979_210 Hb_011512_100--Hb_030565_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0448268 2.33902 56.3407 9.2008 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0821235 0 0 0.271767 22.7815

CAGE analysis