Hb_002561_040

Information

Type -
Description -
Location Contig2561: 36522-40035
Sequence    

Annotation

kegg
ID tcc:TCM_007877
description Photosynthetic electron transfer C
nr
ID XP_007043436.1
description Photosynthetic electron transfer C [Theobroma cacao]
swissprot
ID P26291
description Cytochrome b6-f complex iron-sulfur subunit, chloroplastic OS=Pisum sativum GN=petC PE=2 SV=1
trembl
ID A0A061E3S5
description Cytochrome b6-f complex iron-sulfur subunit OS=Theobroma cacao GN=TCM_007877 PE=3 SV=1
Gene Ontology
ID GO:0042651
description cytochrome b6-f complex iron-sulfur chloroplastic-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_26715: 36592-40121 , PASA_asmbl_26716: 37782-39270
cDNA
(Sanger)
(ID:Location)		 002_K04.ab1: 36805-40028 , 007_N18.ab1: 36838-40035 , 008_J02.ab1: 36840-40028 , 010_M23.ab1: 37657-40121 , 011_C13.ab1: 36703-40028 , 011_M11.ab1: 36838-40028 , 024_N11.ab1: 37623-40035 , 031_K01.ab1: 36838-40028 , 041_A03.ab1: 37699-40035 , 043_M02.ab1: 36838-40028 , 044_N24.ab1: 36838-40028 , 049_C19.ab1: 37638-40026

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002561_040 0.0 - - Photosynthetic electron transfer C [Theobroma cacao]
2 Hb_000084_210 0.0712990684 - - hypothetical protein POPTR_0016s08050g [Populus trichocarpa]
3 Hb_011716_140 0.0777896679 transcription factor TF Family: MYB-related PREDICTED: myb-like protein J [Jatropha curcas]
4 Hb_000928_100 0.0849033517 - - RNA polymerase sigma factor rpoD, putative [Ricinus communis]
5 Hb_002078_280 0.0871136637 - - chlorophyll a/b-binding protein type II precursor [Populus trichocarpa]
6 Hb_000386_010 0.0877135841 - - conserved hypothetical protein [Ricinus communis]
7 Hb_001916_110 0.0908202717 - - PREDICTED: uncharacterized protein LOC105641510 [Jatropha curcas]
8 Hb_033834_020 0.0925942982 - - conserved hypothetical protein [Ricinus communis]
9 Hb_022167_010 0.0928903563 - - Kinase, putative isoform 2 [Theobroma cacao]
10 Hb_030565_020 0.0951693638 - - PREDICTED: protein ECERIFERUM 26 [Jatropha curcas]
11 Hb_006775_100 0.096870741 - - Xylem serine proteinase 1 precursor, putative [Ricinus communis]
12 Hb_002805_200 0.0979617318 - - PREDICTED: serine--glyoxylate aminotransferase [Nelumbo nucifera]
13 Hb_001662_090 0.1002581989 - - PREDICTED: thiosulfate sulfurtransferase 16, chloroplastic isoform X1 [Jatropha curcas]
14 Hb_004627_050 0.1014482375 - - Chlorophyll a-b binding protein 6A [Morus notabilis]
15 Hb_048141_050 0.1026323874 - - hypothetical protein PRUPE_ppa009153mg [Prunus persica]
16 Hb_011512_100 0.1032902279 - - PREDICTED: uncharacterized protein LOC105650382 isoform X1 [Jatropha curcas]
17 Hb_001233_050 0.1050331864 - - Magnesium-protoporphyrin IX monomethyl ester [oxidative] cyclase, chloroplast precursor, putative [Ricinus communis]
18 Hb_000749_140 0.1092381538 - - PREDICTED: 2-succinylbenzoate--CoA ligase, chloroplastic/peroxisomal [Jatropha curcas]
19 Hb_001942_060 0.1098821913 - - conserved hypothetical protein [Ricinus communis]
20 Hb_002259_020 0.1126836769 - - PREDICTED: uncharacterized protein LOC105646333 [Jatropha curcas]

Gene co-expression network

sample Hb_002561_040 Hb_002561_040 Hb_000084_210 Hb_000084_210 Hb_002561_040--Hb_000084_210 Hb_011716_140 Hb_011716_140 Hb_002561_040--Hb_011716_140 Hb_000928_100 Hb_000928_100 Hb_002561_040--Hb_000928_100 Hb_002078_280 Hb_002078_280 Hb_002561_040--Hb_002078_280 Hb_000386_010 Hb_000386_010 Hb_002561_040--Hb_000386_010 Hb_001916_110 Hb_001916_110 Hb_002561_040--Hb_001916_110 Hb_002499_050 Hb_002499_050 Hb_000084_210--Hb_002499_050 Hb_004627_050 Hb_004627_050 Hb_000084_210--Hb_004627_050 Hb_001369_590 Hb_001369_590 Hb_000084_210--Hb_001369_590 Hb_002259_020 Hb_002259_020 Hb_000084_210--Hb_002259_020 Hb_011512_100 Hb_011512_100 Hb_000084_210--Hb_011512_100 Hb_011716_140--Hb_002078_280 Hb_030565_020 Hb_030565_020 Hb_011716_140--Hb_030565_020 Hb_002253_020 Hb_002253_020 Hb_011716_140--Hb_002253_020 Hb_011716_140--Hb_011512_100 Hb_011716_140--Hb_004627_050 Hb_011716_140--Hb_002259_020 Hb_022167_010 Hb_022167_010 Hb_000928_100--Hb_022167_010 Hb_000928_100--Hb_000386_010 Hb_000749_140 Hb_000749_140 Hb_000928_100--Hb_000749_140 Hb_000294_020 Hb_000294_020 Hb_000928_100--Hb_000294_020 Hb_033834_020 Hb_033834_020 Hb_000928_100--Hb_033834_020 Hb_000928_100--Hb_001916_110 Hb_002078_280--Hb_011512_100 Hb_002078_280--Hb_004627_050 Hb_001638_060 Hb_001638_060 Hb_002078_280--Hb_001638_060 Hb_006261_020 Hb_006261_020 Hb_002078_280--Hb_006261_020 Hb_001233_050 Hb_001233_050 Hb_002078_280--Hb_001233_050 Hb_005305_140 Hb_005305_140 Hb_000386_010--Hb_005305_140 Hb_004109_140 Hb_004109_140 Hb_000386_010--Hb_004109_140 Hb_000386_010--Hb_022167_010 Hb_005888_060 Hb_005888_060 Hb_000386_010--Hb_005888_060 Hb_001662_090 Hb_001662_090 Hb_000386_010--Hb_001662_090 Hb_001916_110--Hb_000749_140 Hb_006775_100 Hb_006775_100 Hb_001916_110--Hb_006775_100 Hb_002805_200 Hb_002805_200 Hb_001916_110--Hb_002805_200 Hb_000340_280 Hb_000340_280 Hb_001916_110--Hb_000340_280 Hb_101133_030 Hb_101133_030 Hb_001916_110--Hb_101133_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0253876 61.9949 888.139 98.4551 0.0394389 0.0756458
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.06963 0.475527 0 3.01074 410.454

CAGE analysis