Hb_001916_110

Information

Type -
Description -
Location Contig1916: 104451-105061
Sequence    

Annotation

kegg
ID rcu:RCOM_0346870
description hypothetical protein
nr
ID XP_012081468.1
description PREDICTED: uncharacterized protein LOC105641510 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067KDK1
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_18498 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_19122: 104460-105342
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001916_110 0.0 - - PREDICTED: uncharacterized protein LOC105641510 [Jatropha curcas]
2 Hb_000749_140 0.0549735741 - - PREDICTED: 2-succinylbenzoate--CoA ligase, chloroplastic/peroxisomal [Jatropha curcas]
3 Hb_006775_100 0.063994974 - - Xylem serine proteinase 1 precursor, putative [Ricinus communis]
4 Hb_002805_200 0.0723551947 - - PREDICTED: serine--glyoxylate aminotransferase [Nelumbo nucifera]
5 Hb_000340_280 0.0774297334 - - conserved hypothetical protein [Ricinus communis]
6 Hb_000928_100 0.077971694 - - RNA polymerase sigma factor rpoD, putative [Ricinus communis]
7 Hb_101133_030 0.0785859939 - - DUF26 domain-containing protein 1 precursor, putative [Ricinus communis]
8 Hb_001864_050 0.0844645468 - - chloroplast oxygen-evolving enhancer protein [Manihot esculenta]
9 Hb_003683_170 0.0847724892 - - conserved hypothetical protein [Ricinus communis]
10 Hb_001233_050 0.0856129232 - - Magnesium-protoporphyrin IX monomethyl ester [oxidative] cyclase, chloroplast precursor, putative [Ricinus communis]
11 Hb_001662_090 0.0860013841 - - PREDICTED: thiosulfate sulfurtransferase 16, chloroplastic isoform X1 [Jatropha curcas]
12 Hb_000809_190 0.0887737415 - - PREDICTED: myosin-6-like [Jatropha curcas]
13 Hb_002561_040 0.0908202717 - - Photosynthetic electron transfer C [Theobroma cacao]
14 Hb_000386_010 0.0915689091 - - conserved hypothetical protein [Ricinus communis]
15 Hb_002078_280 0.0924874435 - - chlorophyll a/b-binding protein type II precursor [Populus trichocarpa]
16 Hb_000030_070 0.0939466783 - - conserved hypothetical protein [Ricinus communis]
17 Hb_022167_010 0.0953116414 - - Kinase, putative isoform 2 [Theobroma cacao]
18 Hb_001942_060 0.0960262231 - - conserved hypothetical protein [Ricinus communis]
19 Hb_000281_120 0.1011424658 - - protein binding protein, putative [Ricinus communis]
20 Hb_011716_140 0.101599854 transcription factor TF Family: MYB-related PREDICTED: myb-like protein J [Jatropha curcas]

Gene co-expression network

sample Hb_001916_110 Hb_001916_110 Hb_000749_140 Hb_000749_140 Hb_001916_110--Hb_000749_140 Hb_006775_100 Hb_006775_100 Hb_001916_110--Hb_006775_100 Hb_002805_200 Hb_002805_200 Hb_001916_110--Hb_002805_200 Hb_000340_280 Hb_000340_280 Hb_001916_110--Hb_000340_280 Hb_000928_100 Hb_000928_100 Hb_001916_110--Hb_000928_100 Hb_101133_030 Hb_101133_030 Hb_001916_110--Hb_101133_030 Hb_000749_140--Hb_101133_030 Hb_000749_140--Hb_000340_280 Hb_001233_050 Hb_001233_050 Hb_000749_140--Hb_001233_050 Hb_001942_060 Hb_001942_060 Hb_000749_140--Hb_001942_060 Hb_000749_140--Hb_000928_100 Hb_011716_140 Hb_011716_140 Hb_006775_100--Hb_011716_140 Hb_002078_280 Hb_002078_280 Hb_006775_100--Hb_002078_280 Hb_006775_100--Hb_002805_200 Hb_001662_090 Hb_001662_090 Hb_006775_100--Hb_001662_090 Hb_003683_170 Hb_003683_170 Hb_006775_100--Hb_003683_170 Hb_000281_120 Hb_000281_120 Hb_002805_200--Hb_000281_120 Hb_003651_030 Hb_003651_030 Hb_002805_200--Hb_003651_030 Hb_002805_200--Hb_000340_280 Hb_001864_050 Hb_001864_050 Hb_002805_200--Hb_001864_050 Hb_078954_030 Hb_078954_030 Hb_002805_200--Hb_078954_030 Hb_002805_200--Hb_001233_050 Hb_000359_050 Hb_000359_050 Hb_000340_280--Hb_000359_050 Hb_000340_280--Hb_101133_030 Hb_000340_280--Hb_003651_030 Hb_000340_280--Hb_000281_120 Hb_001006_150 Hb_001006_150 Hb_000340_280--Hb_001006_150 Hb_022167_010 Hb_022167_010 Hb_000928_100--Hb_022167_010 Hb_000386_010 Hb_000386_010 Hb_000928_100--Hb_000386_010 Hb_000294_020 Hb_000294_020 Hb_000928_100--Hb_000294_020 Hb_033834_020 Hb_033834_020 Hb_000928_100--Hb_033834_020 Hb_001014_240 Hb_001014_240 Hb_101133_030--Hb_001014_240 Hb_101133_030--Hb_000359_050 Hb_101133_030--Hb_001233_050 Hb_101133_030--Hb_003651_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.885598 27.7007 438.587 48.5893 0.785791 0.909838
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.709585 0.371668 0 7.31064 290.162

CAGE analysis