Hb_002078_280

Information

Type -
Description -
Location Contig2078: 210697-213199
Sequence    

Annotation

kegg
ID pop:POPTR_0001s13800g
description POPTRDRAFT_548030; chlorophyll a/b-binding protein type II precursor
nr
ID XP_002299309.1
description chlorophyll a/b-binding protein type II precursor [Populus trichocarpa]
swissprot
ID P13869
description Chlorophyll a-b binding protein, chloroplastic OS=Petunia hybrida PE=2 SV=1
trembl
ID B9GML1
description Chlorophyll a/b-binding protein type II OS=Populus trichocarpa GN=POPTR_0001s13800g PE=4 SV=1
Gene Ontology
ID GO:0016020
description chlorophyll a-b binding protein chloroplastic

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_21448: 211464-213042 , PASA_asmbl_21449: 211464-213042 , PASA_asmbl_21450: 211515-211622
cDNA
(Sanger)
(ID:Location)		 009_B15.ab1: 211464-212596 , 012_H14.ab1: 211474-212603 , 014_F07.ab1: 211484-212655 , 019_C11.ab1: 211484-212627 , 023_O01.ab1: 211464-212570 , 025_M09.ab1: 211804-212833 , 030_G24.ab1: 211464-212660 , 042_C07.ab1: 211474-212597

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002078_280 0.0 - - chlorophyll a/b-binding protein type II precursor [Populus trichocarpa]
2 Hb_011716_140 0.0359772804 transcription factor TF Family: MYB-related PREDICTED: myb-like protein J [Jatropha curcas]
3 Hb_011512_100 0.0513029028 - - PREDICTED: uncharacterized protein LOC105650382 isoform X1 [Jatropha curcas]
4 Hb_004627_050 0.0513883427 - - Chlorophyll a-b binding protein 6A [Morus notabilis]
5 Hb_001638_060 0.0645123973 - - PREDICTED: rho GTPase-activating protein 3-like isoform X1 [Populus euphratica]
6 Hb_006261_020 0.0650433696 - - Vacuolar cation/proton exchanger 1a, putative [Ricinus communis]
7 Hb_001233_050 0.0661481581 - - Magnesium-protoporphyrin IX monomethyl ester [oxidative] cyclase, chloroplast precursor, putative [Ricinus communis]
8 Hb_004235_070 0.0676321998 - - acyl carrier protein, putative [Ricinus communis]
9 Hb_002245_050 0.0713246781 - - Oxygen-evolving enhancer protein 3-1, chloroplast precursor, putative [Ricinus communis]
10 Hb_002253_020 0.0717095535 - - PREDICTED: callose synthase 5 [Jatropha curcas]
11 Hb_030565_020 0.0722008518 - - PREDICTED: protein ECERIFERUM 26 [Jatropha curcas]
12 Hb_000030_070 0.072674677 - - conserved hypothetical protein [Ricinus communis]
13 Hb_002259_020 0.0735745049 - - PREDICTED: uncharacterized protein LOC105646333 [Jatropha curcas]
14 Hb_000188_010 0.0746199907 - - PREDICTED: cytochrome P450 94C1-like [Jatropha curcas]
15 Hb_001942_060 0.0758124912 - - conserved hypothetical protein [Ricinus communis]
16 Hb_000821_030 0.0758700394 - - PREDICTED: putative E3 ubiquitin-protein ligase LIN-2 [Jatropha curcas]
17 Hb_003921_020 0.0773707164 - - hypothetical protein JCGZ_10628 [Jatropha curcas]
18 Hb_000210_210 0.0775518887 - - PREDICTED: uncharacterized protein LOC105635822 isoform X1 [Jatropha curcas]
19 Hb_006775_100 0.0834011867 - - Xylem serine proteinase 1 precursor, putative [Ricinus communis]
20 Hb_015807_120 0.0836903265 - - PREDICTED: photosynthetic NDH subunit of lumenal location 3, chloroplastic [Jatropha curcas]

Gene co-expression network

sample Hb_002078_280 Hb_002078_280 Hb_011716_140 Hb_011716_140 Hb_002078_280--Hb_011716_140 Hb_011512_100 Hb_011512_100 Hb_002078_280--Hb_011512_100 Hb_004627_050 Hb_004627_050 Hb_002078_280--Hb_004627_050 Hb_001638_060 Hb_001638_060 Hb_002078_280--Hb_001638_060 Hb_006261_020 Hb_006261_020 Hb_002078_280--Hb_006261_020 Hb_001233_050 Hb_001233_050 Hb_002078_280--Hb_001233_050 Hb_030565_020 Hb_030565_020 Hb_011716_140--Hb_030565_020 Hb_002253_020 Hb_002253_020 Hb_011716_140--Hb_002253_020 Hb_011716_140--Hb_011512_100 Hb_011716_140--Hb_004627_050 Hb_002259_020 Hb_002259_020 Hb_011716_140--Hb_002259_020 Hb_011512_100--Hb_004627_050 Hb_011512_100--Hb_002259_020 Hb_000979_210 Hb_000979_210 Hb_011512_100--Hb_000979_210 Hb_011512_100--Hb_030565_020 Hb_004627_050--Hb_002259_020 Hb_000172_660 Hb_000172_660 Hb_004627_050--Hb_000172_660 Hb_002245_050 Hb_002245_050 Hb_004627_050--Hb_002245_050 Hb_002929_030 Hb_002929_030 Hb_004627_050--Hb_002929_030 Hb_004235_070 Hb_004235_070 Hb_001638_060--Hb_004235_070 Hb_015807_120 Hb_015807_120 Hb_001638_060--Hb_015807_120 Hb_001638_060--Hb_006261_020 Hb_000210_210 Hb_000210_210 Hb_001638_060--Hb_000210_210 Hb_000821_030 Hb_000821_030 Hb_001638_060--Hb_000821_030 Hb_000030_070 Hb_000030_070 Hb_001638_060--Hb_000030_070 Hb_006261_020--Hb_004235_070 Hb_000740_010 Hb_000740_010 Hb_006261_020--Hb_000740_010 Hb_048476_090 Hb_048476_090 Hb_006261_020--Hb_048476_090 Hb_006261_020--Hb_015807_120 Hb_071557_010 Hb_071557_010 Hb_006261_020--Hb_071557_010 Hb_001942_060 Hb_001942_060 Hb_001233_050--Hb_001942_060 Hb_002805_200 Hb_002805_200 Hb_001233_050--Hb_002805_200 Hb_000210_030 Hb_000210_030 Hb_001233_050--Hb_000210_030 Hb_101133_030 Hb_101133_030 Hb_001233_050--Hb_101133_030 Hb_001233_050--Hb_000821_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.158697 48.7542 2047.28 244.611 0.0477176 0.193126
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.832661 0.968302 0 3.06378 1172.67

CAGE analysis