Hb_006261_020

Information

Type -
Description -
Location Contig6261: 44141-47886
Sequence    

Annotation

kegg
ID rcu:RCOM_0643910
description Vacuolar cation/proton exchanger 1a, putative
nr
ID XP_002528100.1
description Vacuolar cation/proton exchanger 1a, putative [Ricinus communis]
swissprot
ID Q93Z81
description Vacuolar cation/proton exchanger 3 OS=Arabidopsis thaliana GN=CAX3 PE=1 SV=1
trembl
ID B9SQ31
description Vacuolar cation/proton exchanger 1a, putative OS=Ricinus communis GN=RCOM_0643910 PE=4 SV=1
Gene Ontology
ID GO:0016021
description vacuolar cation proton exchanger 3

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_51668: 44064-47882
cDNA
(Sanger)
(ID:Location)		 008_P21.ab1: 44064-45710

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_006261_020 0.0 - - Vacuolar cation/proton exchanger 1a, putative [Ricinus communis]
2 Hb_004235_070 0.0237939753 - - acyl carrier protein, putative [Ricinus communis]
3 Hb_000740_010 0.0462827061 - - cytochrome P450, putative [Ricinus communis]
4 Hb_001638_060 0.0469317364 - - PREDICTED: rho GTPase-activating protein 3-like isoform X1 [Populus euphratica]
5 Hb_048476_090 0.0472651295 - - conserved hypothetical protein [Ricinus communis]
6 Hb_015807_120 0.0486991999 - - PREDICTED: photosynthetic NDH subunit of lumenal location 3, chloroplastic [Jatropha curcas]
7 Hb_071557_010 0.0512513722 - - hypothetical protein POPTR_0008s06270g [Populus trichocarpa]
8 Hb_000210_210 0.0534473467 - - PREDICTED: uncharacterized protein LOC105635822 isoform X1 [Jatropha curcas]
9 Hb_099335_010 0.0566460005 - - PREDICTED: UDP-glycosyltransferase 76C2-like [Populus euphratica]
10 Hb_002006_080 0.0597674238 - - PREDICTED: CRAL-TRIO domain-containing protein YKL091C-like isoform X2 [Citrus sinensis]
11 Hb_002253_020 0.0612589985 - - PREDICTED: callose synthase 5 [Jatropha curcas]
12 Hb_096267_010 0.0641255948 - - hypothetical protein POPTR_0008s06270g [Populus trichocarpa]
13 Hb_002078_280 0.0650433696 - - chlorophyll a/b-binding protein type II precursor [Populus trichocarpa]
14 Hb_000979_210 0.0660792487 - - conserved hypothetical protein [Ricinus communis]
15 Hb_006555_020 0.0663843687 transcription factor TF Family: NAC PREDICTED: NAC domain-containing protein 55-like [Jatropha curcas]
16 Hb_003392_060 0.0678594284 - - Flavonol 4'-sulfotransferase, putative [Ricinus communis]
17 Hb_000011_510 0.0680695929 - - Esterase precursor, putative [Ricinus communis]
18 Hb_001284_050 0.06831944 - - PREDICTED: uncharacterized protein LOC100781779 isoform X1 [Glycine max]
19 Hb_000030_070 0.0693582612 - - conserved hypothetical protein [Ricinus communis]
20 Hb_000188_010 0.0775695851 - - PREDICTED: cytochrome P450 94C1-like [Jatropha curcas]

Gene co-expression network

sample Hb_006261_020 Hb_006261_020 Hb_004235_070 Hb_004235_070 Hb_006261_020--Hb_004235_070 Hb_000740_010 Hb_000740_010 Hb_006261_020--Hb_000740_010 Hb_001638_060 Hb_001638_060 Hb_006261_020--Hb_001638_060 Hb_048476_090 Hb_048476_090 Hb_006261_020--Hb_048476_090 Hb_015807_120 Hb_015807_120 Hb_006261_020--Hb_015807_120 Hb_071557_010 Hb_071557_010 Hb_006261_020--Hb_071557_010 Hb_004235_070--Hb_000740_010 Hb_004235_070--Hb_015807_120 Hb_004235_070--Hb_071557_010 Hb_004235_070--Hb_001638_060 Hb_002006_080 Hb_002006_080 Hb_004235_070--Hb_002006_080 Hb_000740_010--Hb_071557_010 Hb_000740_010--Hb_048476_090 Hb_099335_010 Hb_099335_010 Hb_000740_010--Hb_099335_010 Hb_003392_060 Hb_003392_060 Hb_000740_010--Hb_003392_060 Hb_000740_010--Hb_015807_120 Hb_001638_060--Hb_015807_120 Hb_000210_210 Hb_000210_210 Hb_001638_060--Hb_000210_210 Hb_000821_030 Hb_000821_030 Hb_001638_060--Hb_000821_030 Hb_000030_070 Hb_000030_070 Hb_001638_060--Hb_000030_070 Hb_048476_090--Hb_099335_010 Hb_048476_090--Hb_071557_010 Hb_000011_510 Hb_000011_510 Hb_048476_090--Hb_000011_510 Hb_001284_050 Hb_001284_050 Hb_048476_090--Hb_001284_050 Hb_015807_120--Hb_003392_060 Hb_015807_120--Hb_071557_010 Hb_011433_010 Hb_011433_010 Hb_015807_120--Hb_011433_010 Hb_071557_010--Hb_003392_060 Hb_071557_010--Hb_099335_010 Hb_071557_010--Hb_000011_510
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0135145 0.815599 177.792 16.7736 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.173364 0 0.0368647 0.186215 109.342

CAGE analysis