Hb_002006_080

Information

Type -
Description -
Location Contig2006: 77785-80557
Sequence    

Annotation

kegg
ID cic:CICLE_v10032562mg
description hypothetical protein
nr
ID XP_006485075.1
description PREDICTED: CRAL-TRIO domain-containing protein YKL091C-like isoform X2 [Citrus sinensis]
swissprot
ID Q55CU8
description Random slug protein 5 OS=Dictyostelium discoideum GN=rsc5 PE=2 SV=1
trembl
ID E6NU10
description JHL07K02.10 protein OS=Jatropha curcas GN=JHL07K02.10 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_20337: 77799-80497 , PASA_asmbl_20338: 79189-79455
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002006_080 0.0 - - PREDICTED: CRAL-TRIO domain-containing protein YKL091C-like isoform X2 [Citrus sinensis]
2 Hb_000847_040 0.0277782236 - - PREDICTED: EPIDERMAL PATTERNING FACTOR-like protein 9 [Jatropha curcas]
3 Hb_011316_080 0.0421569714 - - Cucumisin precursor, putative [Ricinus communis]
4 Hb_000979_210 0.0428618108 - - conserved hypothetical protein [Ricinus communis]
5 Hb_000740_010 0.0430006955 - - cytochrome P450, putative [Ricinus communis]
6 Hb_004235_070 0.0504716048 - - acyl carrier protein, putative [Ricinus communis]
7 Hb_071557_010 0.0547613279 - - hypothetical protein POPTR_0008s06270g [Populus trichocarpa]
8 Hb_000210_210 0.0557814018 - - PREDICTED: uncharacterized protein LOC105635822 isoform X1 [Jatropha curcas]
9 Hb_089140_130 0.0568477537 - - hypothetical protein POPTR_0006s14510g [Populus trichocarpa]
10 Hb_006261_020 0.0597674238 - - Vacuolar cation/proton exchanger 1a, putative [Ricinus communis]
11 Hb_000635_240 0.0608942246 - - chlorophyll a/b-binding protein type II precursor [Populus trichocarpa]
12 Hb_001033_080 0.0633380146 transcription factor TF Family: C2H2 Transcriptional regulator SUPERMAN, putative [Ricinus communis]
13 Hb_000414_040 0.06341219 - - hypothetical protein POPTR_0009s13250g [Populus trichocarpa]
14 Hb_001433_210 0.0639041996 - - PREDICTED: wall-associated receptor kinase-like 20 [Jatropha curcas]
15 Hb_048476_090 0.0646504323 - - conserved hypothetical protein [Ricinus communis]
16 Hb_009771_010 0.06520532 - - PREDICTED: glycerol-3-phosphate 2-O-acyltransferase 6 [Populus euphratica]
17 Hb_001638_060 0.0660999293 - - PREDICTED: rho GTPase-activating protein 3-like isoform X1 [Populus euphratica]
18 Hb_015807_120 0.0678736916 - - PREDICTED: photosynthetic NDH subunit of lumenal location 3, chloroplastic [Jatropha curcas]
19 Hb_001153_170 0.0689592715 - - PREDICTED: protein HOTHEAD [Populus euphratica]
20 Hb_002028_070 0.0700455555 - - PREDICTED: circadian locomoter output cycles protein kaput [Jatropha curcas]

Gene co-expression network

sample Hb_002006_080 Hb_002006_080 Hb_000847_040 Hb_000847_040 Hb_002006_080--Hb_000847_040 Hb_011316_080 Hb_011316_080 Hb_002006_080--Hb_011316_080 Hb_000979_210 Hb_000979_210 Hb_002006_080--Hb_000979_210 Hb_000740_010 Hb_000740_010 Hb_002006_080--Hb_000740_010 Hb_004235_070 Hb_004235_070 Hb_002006_080--Hb_004235_070 Hb_071557_010 Hb_071557_010 Hb_002006_080--Hb_071557_010 Hb_000847_040--Hb_011316_080 Hb_089140_130 Hb_089140_130 Hb_000847_040--Hb_089140_130 Hb_000847_040--Hb_000979_210 Hb_001153_170 Hb_001153_170 Hb_000847_040--Hb_001153_170 Hb_009771_010 Hb_009771_010 Hb_000847_040--Hb_009771_010 Hb_011316_080--Hb_089140_130 Hb_011316_080--Hb_009771_010 Hb_011316_080--Hb_001153_170 Hb_001546_140 Hb_001546_140 Hb_011316_080--Hb_001546_140 Hb_000979_210--Hb_011316_080 Hb_000210_210 Hb_000210_210 Hb_000979_210--Hb_000210_210 Hb_000979_210--Hb_089140_130 Hb_000635_240 Hb_000635_240 Hb_000979_210--Hb_000635_240 Hb_000740_010--Hb_071557_010 Hb_048476_090 Hb_048476_090 Hb_000740_010--Hb_048476_090 Hb_099335_010 Hb_099335_010 Hb_000740_010--Hb_099335_010 Hb_000740_010--Hb_004235_070 Hb_003392_060 Hb_003392_060 Hb_000740_010--Hb_003392_060 Hb_015807_120 Hb_015807_120 Hb_000740_010--Hb_015807_120 Hb_006261_020 Hb_006261_020 Hb_004235_070--Hb_006261_020 Hb_004235_070--Hb_015807_120 Hb_004235_070--Hb_071557_010 Hb_001638_060 Hb_001638_060 Hb_004235_070--Hb_001638_060 Hb_071557_010--Hb_003392_060 Hb_071557_010--Hb_099335_010 Hb_071557_010--Hb_015807_120 Hb_071557_010--Hb_048476_090 Hb_000011_510 Hb_000011_510 Hb_071557_010--Hb_000011_510
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 17.8965 2.16015 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 9.68123

CAGE analysis