Hb_089140_130

Information

Type -
Description -
Location Contig89140: 88811-89857
Sequence    

Annotation

kegg
ID pop:POPTR_0006s14510g
description hypothetical protein
nr
ID XP_006381632.1
description hypothetical protein POPTR_0006s14510g [Populus trichocarpa]
swissprot
ID Q9ZRA4
description Auxin-binding protein ABP19a OS=Prunus persica GN=ABP19A PE=3 SV=1
trembl
ID U5GAZ1
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0006s14510g PE=4 SV=1
Gene Ontology
ID GO:0005576
description auxin-binding protein abp19a-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_089140_130 0.0 - - hypothetical protein POPTR_0006s14510g [Populus trichocarpa]
2 Hb_001153_170 0.0158993421 - - PREDICTED: protein HOTHEAD [Populus euphratica]
3 Hb_011316_080 0.0167901342 - - Cucumisin precursor, putative [Ricinus communis]
4 Hb_009771_010 0.0208999711 - - PREDICTED: glycerol-3-phosphate 2-O-acyltransferase 6 [Populus euphratica]
5 Hb_001546_140 0.0327667039 - - Auxin-binding protein ABP19a precursor, putative [Ricinus communis]
6 Hb_000847_040 0.0354880856 - - PREDICTED: EPIDERMAL PATTERNING FACTOR-like protein 9 [Jatropha curcas]
7 Hb_006594_030 0.0367636043 - - -
8 Hb_007617_030 0.0478876553 - - hypothetical protein JCGZ_26801 [Jatropha curcas]
9 Hb_000635_240 0.0498603883 - - chlorophyll a/b-binding protein type II precursor [Populus trichocarpa]
10 Hb_002929_030 0.0502967952 - - Serine/threonine-protein kinase-transforming protein raf, putative [Ricinus communis]
11 Hb_000136_120 0.0503033412 - - PREDICTED: probable strigolactone esterase D14 homolog [Jatropha curcas]
12 Hb_000167_150 0.0539366875 - - hypothetical protein POPTR_0008s03590g [Populus trichocarpa]
13 Hb_000887_030 0.0563361602 - - serine carboxypeptidase, putative [Ricinus communis]
14 Hb_002006_080 0.0568477537 - - PREDICTED: CRAL-TRIO domain-containing protein YKL091C-like isoform X2 [Citrus sinensis]
15 Hb_000979_210 0.0571298373 - - conserved hypothetical protein [Ricinus communis]
16 Hb_001433_210 0.0590523356 - - PREDICTED: wall-associated receptor kinase-like 20 [Jatropha curcas]
17 Hb_001946_070 0.0626448651 transcription factor TF Family: ERF DNA binding protein, putative [Ricinus communis]
18 Hb_025048_050 0.0631350999 - - PREDICTED: protein PHYTOCHROME KINASE SUBSTRATE 3 [Jatropha curcas]
19 Hb_000243_360 0.0671912241 transcription factor TF Family: NAC PREDICTED: NAC domain-containing protein 7 isoform X1 [Vitis vinifera]
20 Hb_009846_010 0.0718714068 - - PREDICTED: uncharacterized protein LOC105643801 [Jatropha curcas]

Gene co-expression network

sample Hb_089140_130 Hb_089140_130 Hb_001153_170 Hb_001153_170 Hb_089140_130--Hb_001153_170 Hb_011316_080 Hb_011316_080 Hb_089140_130--Hb_011316_080 Hb_009771_010 Hb_009771_010 Hb_089140_130--Hb_009771_010 Hb_001546_140 Hb_001546_140 Hb_089140_130--Hb_001546_140 Hb_000847_040 Hb_000847_040 Hb_089140_130--Hb_000847_040 Hb_006594_030 Hb_006594_030 Hb_089140_130--Hb_006594_030 Hb_001153_170--Hb_009771_010 Hb_001153_170--Hb_011316_080 Hb_001153_170--Hb_001546_140 Hb_001153_170--Hb_006594_030 Hb_007617_030 Hb_007617_030 Hb_001153_170--Hb_007617_030 Hb_011316_080--Hb_000847_040 Hb_011316_080--Hb_009771_010 Hb_011316_080--Hb_001546_140 Hb_002006_080 Hb_002006_080 Hb_011316_080--Hb_002006_080 Hb_009771_010--Hb_001546_140 Hb_002929_030 Hb_002929_030 Hb_009771_010--Hb_002929_030 Hb_009771_010--Hb_007617_030 Hb_001546_140--Hb_007617_030 Hb_001433_210 Hb_001433_210 Hb_001546_140--Hb_001433_210 Hb_000847_040--Hb_002006_080 Hb_000979_210 Hb_000979_210 Hb_000847_040--Hb_000979_210 Hb_000847_040--Hb_001153_170 Hb_000847_040--Hb_009771_010 Hb_000136_120 Hb_000136_120 Hb_006594_030--Hb_000136_120 Hb_000167_150 Hb_000167_150 Hb_006594_030--Hb_000167_150 Hb_006594_030--Hb_009771_010 Hb_006594_030--Hb_007617_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.415407 0.0730595 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0.196484

CAGE analysis