Hb_009771_010

Information

Type -
Description -
Location Contig9771: 5055-8300
Sequence    

Annotation

kegg
ID pop:POPTR_0006s09900g
description POPTRDRAFT_560888; phospholipid/glycerol acyltransferase family protein
nr
ID XP_011047425.1
description PREDICTED: glycerol-3-phosphate 2-O-acyltransferase 6 [Populus euphratica]
swissprot
ID O80437
description Glycerol-3-phosphate 2-O-acyltransferase 6 OS=Arabidopsis thaliana GN=GPAT6 PE=1 SV=1
trembl
ID A9PGT0
description Putative uncharacterized protein OS=Populus trichocarpa PE=2 SV=1
Gene Ontology
ID GO:0016746
description glycerol-3-phosphate 2-o-acyltransferase 6-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_64187: 4887-8343
cDNA
(Sanger)
(ID:Location)		 015_F15.ab1: 6083-8274 , 017_H15.ab1: 5986-8272 , 029_E04.ab1: 7726-8343 , 031_F01.ab1: 5923-8173 , 032_M07.ab1: 6069-8274 , 035_M21.ab1: 6076-8274 , 043_M04.ab1: 5987-8274 , 053_M16.ab1: 5987-8173

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_009771_010 0.0 - - PREDICTED: glycerol-3-phosphate 2-O-acyltransferase 6 [Populus euphratica]
2 Hb_001153_170 0.0186499035 - - PREDICTED: protein HOTHEAD [Populus euphratica]
3 Hb_089140_130 0.0208999711 - - hypothetical protein POPTR_0006s14510g [Populus trichocarpa]
4 Hb_001546_140 0.0249408831 - - Auxin-binding protein ABP19a precursor, putative [Ricinus communis]
5 Hb_011316_080 0.0264148034 - - Cucumisin precursor, putative [Ricinus communis]
6 Hb_002929_030 0.0371996462 - - Serine/threonine-protein kinase-transforming protein raf, putative [Ricinus communis]
7 Hb_007617_030 0.0378927142 - - hypothetical protein JCGZ_26801 [Jatropha curcas]
8 Hb_006594_030 0.0418249493 - - -
9 Hb_000635_240 0.0442068976 - - chlorophyll a/b-binding protein type II precursor [Populus trichocarpa]
10 Hb_000887_030 0.0465687175 - - serine carboxypeptidase, putative [Ricinus communis]
11 Hb_000847_040 0.0484604385 - - PREDICTED: EPIDERMAL PATTERNING FACTOR-like protein 9 [Jatropha curcas]
12 Hb_001433_210 0.0539991911 - - PREDICTED: wall-associated receptor kinase-like 20 [Jatropha curcas]
13 Hb_000136_120 0.0562570027 - - PREDICTED: probable strigolactone esterase D14 homolog [Jatropha curcas]
14 Hb_000167_150 0.061929963 - - hypothetical protein POPTR_0008s03590g [Populus trichocarpa]
15 Hb_000979_210 0.0622383711 - - conserved hypothetical protein [Ricinus communis]
16 Hb_002006_080 0.06520532 - - PREDICTED: CRAL-TRIO domain-containing protein YKL091C-like isoform X2 [Citrus sinensis]
17 Hb_031862_210 0.0662020444 - - hypothetical protein JCGZ_24955 [Jatropha curcas]
18 Hb_000836_620 0.0669331787 - - PREDICTED: protochlorophyllide reductase, chloroplastic [Jatropha curcas]
19 Hb_002245_050 0.0698794376 - - Oxygen-evolving enhancer protein 3-1, chloroplast precursor, putative [Ricinus communis]
20 Hb_009846_010 0.0707783185 - - PREDICTED: uncharacterized protein LOC105643801 [Jatropha curcas]

Gene co-expression network

sample Hb_009771_010 Hb_009771_010 Hb_001153_170 Hb_001153_170 Hb_009771_010--Hb_001153_170 Hb_089140_130 Hb_089140_130 Hb_009771_010--Hb_089140_130 Hb_001546_140 Hb_001546_140 Hb_009771_010--Hb_001546_140 Hb_011316_080 Hb_011316_080 Hb_009771_010--Hb_011316_080 Hb_002929_030 Hb_002929_030 Hb_009771_010--Hb_002929_030 Hb_007617_030 Hb_007617_030 Hb_009771_010--Hb_007617_030 Hb_001153_170--Hb_089140_130 Hb_001153_170--Hb_011316_080 Hb_001153_170--Hb_001546_140 Hb_006594_030 Hb_006594_030 Hb_001153_170--Hb_006594_030 Hb_001153_170--Hb_007617_030 Hb_089140_130--Hb_011316_080 Hb_089140_130--Hb_001546_140 Hb_000847_040 Hb_000847_040 Hb_089140_130--Hb_000847_040 Hb_089140_130--Hb_006594_030 Hb_001546_140--Hb_007617_030 Hb_001546_140--Hb_011316_080 Hb_001433_210 Hb_001433_210 Hb_001546_140--Hb_001433_210 Hb_011316_080--Hb_000847_040 Hb_002006_080 Hb_002006_080 Hb_011316_080--Hb_002006_080 Hb_002929_030--Hb_001546_140 Hb_002929_030--Hb_001153_170 Hb_000635_240 Hb_000635_240 Hb_002929_030--Hb_000635_240 Hb_002929_030--Hb_007617_030 Hb_002929_030--Hb_089140_130 Hb_000887_030 Hb_000887_030 Hb_007617_030--Hb_000887_030 Hb_031862_210 Hb_031862_210 Hb_007617_030--Hb_031862_210 Hb_007617_030--Hb_089140_130
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.166825 788.389 151.366 0 0.0896846
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.482367 388.867

CAGE analysis