Hb_000887_030

Information

Type -
Description -
Location Contig887: 39511-46748
Sequence    

Annotation

kegg
ID rcu:RCOM_0623820
description serine carboxypeptidase, putative (EC:3.4.16.6)
nr
ID XP_002529402.1
description serine carboxypeptidase, putative [Ricinus communis]
swissprot
ID Q9M099
description Serine carboxypeptidase 24 OS=Arabidopsis thaliana GN=SCPL24 PE=1 SV=1
trembl
ID B9STT3
description Carboxypeptidase OS=Ricinus communis GN=RCOM_0623820 PE=3 SV=1
Gene Ontology
ID GO:0004185
description serine carboxypeptidase 24-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_61518: 39551-46707 , PASA_asmbl_61520: 45921-46362
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000887_030 0.0 - - serine carboxypeptidase, putative [Ricinus communis]
2 Hb_001546_140 0.0424719188 - - Auxin-binding protein ABP19a precursor, putative [Ricinus communis]
3 Hb_007617_030 0.0459849934 - - hypothetical protein JCGZ_26801 [Jatropha curcas]
4 Hb_009771_010 0.0465687175 - - PREDICTED: glycerol-3-phosphate 2-O-acyltransferase 6 [Populus euphratica]
5 Hb_001153_170 0.0541699004 - - PREDICTED: protein HOTHEAD [Populus euphratica]
6 Hb_002929_030 0.0557889633 - - Serine/threonine-protein kinase-transforming protein raf, putative [Ricinus communis]
7 Hb_031862_210 0.0559052307 - - hypothetical protein JCGZ_24955 [Jatropha curcas]
8 Hb_089140_130 0.0563361602 - - hypothetical protein POPTR_0006s14510g [Populus trichocarpa]
9 Hb_001433_210 0.057026414 - - PREDICTED: wall-associated receptor kinase-like 20 [Jatropha curcas]
10 Hb_011316_080 0.0597458029 - - Cucumisin precursor, putative [Ricinus communis]
11 Hb_000635_240 0.0637757583 - - chlorophyll a/b-binding protein type II precursor [Populus trichocarpa]
12 Hb_006594_030 0.0678970284 - - -
13 Hb_147976_010 0.068303583 - - -
14 Hb_145502_010 0.0700053306 transcription factor TF Family: MYB PREDICTED: transcription factor MYB82-like [Jatropha curcas]
15 Hb_000836_620 0.0706656993 - - PREDICTED: protochlorophyllide reductase, chloroplastic [Jatropha curcas]
16 Hb_009692_050 0.0730562442 - - -
17 Hb_004785_210 0.0745435019 - - hypothetical protein JCGZ_25215 [Jatropha curcas]
18 Hb_000130_340 0.0760267814 - - -
19 Hb_000142_050 0.0763572065 - - PREDICTED: beta-glucosidase 18-like isoform X1 [Populus euphratica]
20 Hb_002245_050 0.0777576202 - - Oxygen-evolving enhancer protein 3-1, chloroplast precursor, putative [Ricinus communis]

Gene co-expression network

sample Hb_000887_030 Hb_000887_030 Hb_001546_140 Hb_001546_140 Hb_000887_030--Hb_001546_140 Hb_007617_030 Hb_007617_030 Hb_000887_030--Hb_007617_030 Hb_009771_010 Hb_009771_010 Hb_000887_030--Hb_009771_010 Hb_001153_170 Hb_001153_170 Hb_000887_030--Hb_001153_170 Hb_002929_030 Hb_002929_030 Hb_000887_030--Hb_002929_030 Hb_031862_210 Hb_031862_210 Hb_000887_030--Hb_031862_210 Hb_001546_140--Hb_009771_010 Hb_001546_140--Hb_007617_030 Hb_001546_140--Hb_001153_170 Hb_089140_130 Hb_089140_130 Hb_001546_140--Hb_089140_130 Hb_011316_080 Hb_011316_080 Hb_001546_140--Hb_011316_080 Hb_001433_210 Hb_001433_210 Hb_001546_140--Hb_001433_210 Hb_007617_030--Hb_009771_010 Hb_007617_030--Hb_001153_170 Hb_007617_030--Hb_031862_210 Hb_007617_030--Hb_089140_130 Hb_009771_010--Hb_001153_170 Hb_009771_010--Hb_089140_130 Hb_009771_010--Hb_011316_080 Hb_009771_010--Hb_002929_030 Hb_001153_170--Hb_089140_130 Hb_001153_170--Hb_011316_080 Hb_006594_030 Hb_006594_030 Hb_001153_170--Hb_006594_030 Hb_002929_030--Hb_001546_140 Hb_002929_030--Hb_001153_170 Hb_000635_240 Hb_000635_240 Hb_002929_030--Hb_000635_240 Hb_002929_030--Hb_007617_030 Hb_002929_030--Hb_089140_130 Hb_147976_010 Hb_147976_010 Hb_031862_210--Hb_147976_010 Hb_145502_010 Hb_145502_010 Hb_031862_210--Hb_145502_010 Hb_009692_050 Hb_009692_050 Hb_031862_210--Hb_009692_050 Hb_031862_210--Hb_001433_210 Hb_003598_070 Hb_003598_070 Hb_031862_210--Hb_003598_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 9.44982 2.15647 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0.0445411 0.00944748 5.15864

CAGE analysis