Hb_011316_080

Information

Type -
Description -
Location Contig11316: 35328-37661
Sequence    

Annotation

kegg
ID rcu:RCOM_1498530
description Cucumisin precursor, putative (EC:3.4.21.25)
nr
ID XP_002510884.1
description Cucumisin precursor, putative [Ricinus communis]
swissprot
ID O65351
description Subtilisin-like protease SBT1.7 OS=Arabidopsis thaliana GN=SBT1.7 PE=1 SV=1
trembl
ID B9R9K9
description Cucumisin, putative OS=Ricinus communis GN=RCOM_1498530 PE=4 SV=1
Gene Ontology
ID GO:0004252
description subtilisin-like protease

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_011316_080 0.0 - - Cucumisin precursor, putative [Ricinus communis]
2 Hb_089140_130 0.0167901342 - - hypothetical protein POPTR_0006s14510g [Populus trichocarpa]
3 Hb_000847_040 0.0255305095 - - PREDICTED: EPIDERMAL PATTERNING FACTOR-like protein 9 [Jatropha curcas]
4 Hb_009771_010 0.0264148034 - - PREDICTED: glycerol-3-phosphate 2-O-acyltransferase 6 [Populus euphratica]
5 Hb_001153_170 0.0276117755 - - PREDICTED: protein HOTHEAD [Populus euphratica]
6 Hb_001546_140 0.0357792553 - - Auxin-binding protein ABP19a precursor, putative [Ricinus communis]
7 Hb_002006_080 0.0421569714 - - PREDICTED: CRAL-TRIO domain-containing protein YKL091C-like isoform X2 [Citrus sinensis]
8 Hb_000635_240 0.0425866552 - - chlorophyll a/b-binding protein type II precursor [Populus trichocarpa]
9 Hb_000979_210 0.0462626605 - - conserved hypothetical protein [Ricinus communis]
10 Hb_002929_030 0.0508536141 - - Serine/threonine-protein kinase-transforming protein raf, putative [Ricinus communis]
11 Hb_001433_210 0.0511955542 - - PREDICTED: wall-associated receptor kinase-like 20 [Jatropha curcas]
12 Hb_006594_030 0.052787671 - - -
13 Hb_007617_030 0.056015863 - - hypothetical protein JCGZ_26801 [Jatropha curcas]
14 Hb_000887_030 0.0597458029 - - serine carboxypeptidase, putative [Ricinus communis]
15 Hb_000136_120 0.0633695458 - - PREDICTED: probable strigolactone esterase D14 homolog [Jatropha curcas]
16 Hb_002245_050 0.0675882848 - - Oxygen-evolving enhancer protein 3-1, chloroplast precursor, putative [Ricinus communis]
17 Hb_025048_050 0.0679195553 - - PREDICTED: protein PHYTOCHROME KINASE SUBSTRATE 3 [Jatropha curcas]
18 Hb_000167_150 0.0682371256 - - hypothetical protein POPTR_0008s03590g [Populus trichocarpa]
19 Hb_001946_070 0.0698378683 transcription factor TF Family: ERF DNA binding protein, putative [Ricinus communis]
20 Hb_000414_040 0.070968585 - - hypothetical protein POPTR_0009s13250g [Populus trichocarpa]

Gene co-expression network

sample Hb_011316_080 Hb_011316_080 Hb_089140_130 Hb_089140_130 Hb_011316_080--Hb_089140_130 Hb_000847_040 Hb_000847_040 Hb_011316_080--Hb_000847_040 Hb_009771_010 Hb_009771_010 Hb_011316_080--Hb_009771_010 Hb_001153_170 Hb_001153_170 Hb_011316_080--Hb_001153_170 Hb_001546_140 Hb_001546_140 Hb_011316_080--Hb_001546_140 Hb_002006_080 Hb_002006_080 Hb_011316_080--Hb_002006_080 Hb_089140_130--Hb_001153_170 Hb_089140_130--Hb_009771_010 Hb_089140_130--Hb_001546_140 Hb_089140_130--Hb_000847_040 Hb_006594_030 Hb_006594_030 Hb_089140_130--Hb_006594_030 Hb_000847_040--Hb_002006_080 Hb_000979_210 Hb_000979_210 Hb_000847_040--Hb_000979_210 Hb_000847_040--Hb_001153_170 Hb_000847_040--Hb_009771_010 Hb_009771_010--Hb_001153_170 Hb_009771_010--Hb_001546_140 Hb_002929_030 Hb_002929_030 Hb_009771_010--Hb_002929_030 Hb_007617_030 Hb_007617_030 Hb_009771_010--Hb_007617_030 Hb_001153_170--Hb_001546_140 Hb_001153_170--Hb_006594_030 Hb_001153_170--Hb_007617_030 Hb_001546_140--Hb_007617_030 Hb_001433_210 Hb_001433_210 Hb_001546_140--Hb_001433_210 Hb_002006_080--Hb_000979_210 Hb_000740_010 Hb_000740_010 Hb_002006_080--Hb_000740_010 Hb_004235_070 Hb_004235_070 Hb_002006_080--Hb_004235_070 Hb_071557_010 Hb_071557_010 Hb_002006_080--Hb_071557_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0276536 265.628 43.4178 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 132.875

CAGE analysis