Hb_002929_030

Information

Type -
Description -
Location Contig2929: 21364-23570
Sequence    

Annotation

kegg
ID rcu:RCOM_1487300
description Serine/threonine-protein kinase-transforming protein raf, putative (EC:2.7.10.2)
nr
ID XP_002515931.1
description Serine/threonine-protein kinase-transforming protein raf, putative [Ricinus communis]
swissprot
ID C0LGD6
description Probable LRR receptor-like serine/threonine-protein kinase At1g05700 OS=Arabidopsis thaliana GN=At1g05700 PE=2 SV=1
trembl
ID B9RQB2
description Serine/threonine-protein kinase-transforming protein raf, putative OS=Ricinus communis GN=RCOM_1487300 PE=4 SV=1
Gene Ontology
ID GO:0004715
description serine threonine-protein kinase-transforming protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_30724: 22110-22969
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002929_030 0.0 - - Serine/threonine-protein kinase-transforming protein raf, putative [Ricinus communis]
2 Hb_009771_010 0.0371996462 - - PREDICTED: glycerol-3-phosphate 2-O-acyltransferase 6 [Populus euphratica]
3 Hb_001546_140 0.0443578919 - - Auxin-binding protein ABP19a precursor, putative [Ricinus communis]
4 Hb_001153_170 0.0461467634 - - PREDICTED: protein HOTHEAD [Populus euphratica]
5 Hb_000635_240 0.0467909208 - - chlorophyll a/b-binding protein type II precursor [Populus trichocarpa]
6 Hb_007617_030 0.048708207 - - hypothetical protein JCGZ_26801 [Jatropha curcas]
7 Hb_089140_130 0.0502967952 - - hypothetical protein POPTR_0006s14510g [Populus trichocarpa]
8 Hb_011316_080 0.0508536141 - - Cucumisin precursor, putative [Ricinus communis]
9 Hb_002245_050 0.0547302508 - - Oxygen-evolving enhancer protein 3-1, chloroplast precursor, putative [Ricinus communis]
10 Hb_000887_030 0.0557889633 - - serine carboxypeptidase, putative [Ricinus communis]
11 Hb_000836_620 0.0558644845 - - PREDICTED: protochlorophyllide reductase, chloroplastic [Jatropha curcas]
12 Hb_000172_660 0.0620294847 - - flavonoid 3-hydroxylase, putative [Ricinus communis]
13 Hb_001433_210 0.0633350573 - - PREDICTED: wall-associated receptor kinase-like 20 [Jatropha curcas]
14 Hb_006594_030 0.0640401573 - - -
15 Hb_004627_050 0.0641614139 - - Chlorophyll a-b binding protein 6A [Morus notabilis]
16 Hb_032880_010 0.0647082149 - - PREDICTED: beta-glucosidase 24-like [Jatropha curcas]
17 Hb_031377_010 0.0648700542 transcription factor TF Family: C2C2-YABBY unknown [Populus trichocarpa]
18 Hb_000142_050 0.0673665605 - - PREDICTED: beta-glucosidase 18-like isoform X1 [Populus euphratica]
19 Hb_000847_040 0.0683564338 - - PREDICTED: EPIDERMAL PATTERNING FACTOR-like protein 9 [Jatropha curcas]
20 Hb_011512_100 0.0695180263 - - PREDICTED: uncharacterized protein LOC105650382 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_002929_030 Hb_002929_030 Hb_009771_010 Hb_009771_010 Hb_002929_030--Hb_009771_010 Hb_001546_140 Hb_001546_140 Hb_002929_030--Hb_001546_140 Hb_001153_170 Hb_001153_170 Hb_002929_030--Hb_001153_170 Hb_000635_240 Hb_000635_240 Hb_002929_030--Hb_000635_240 Hb_007617_030 Hb_007617_030 Hb_002929_030--Hb_007617_030 Hb_089140_130 Hb_089140_130 Hb_002929_030--Hb_089140_130 Hb_009771_010--Hb_001153_170 Hb_009771_010--Hb_089140_130 Hb_009771_010--Hb_001546_140 Hb_011316_080 Hb_011316_080 Hb_009771_010--Hb_011316_080 Hb_009771_010--Hb_007617_030 Hb_001546_140--Hb_007617_030 Hb_001546_140--Hb_001153_170 Hb_001546_140--Hb_089140_130 Hb_001546_140--Hb_011316_080 Hb_001433_210 Hb_001433_210 Hb_001546_140--Hb_001433_210 Hb_001153_170--Hb_089140_130 Hb_001153_170--Hb_011316_080 Hb_006594_030 Hb_006594_030 Hb_001153_170--Hb_006594_030 Hb_001153_170--Hb_007617_030 Hb_000635_240--Hb_011316_080 Hb_000635_240--Hb_001546_140 Hb_000635_240--Hb_009771_010 Hb_002245_050 Hb_002245_050 Hb_000635_240--Hb_002245_050 Hb_000635_240--Hb_001433_210 Hb_000887_030 Hb_000887_030 Hb_007617_030--Hb_000887_030 Hb_031862_210 Hb_031862_210 Hb_007617_030--Hb_031862_210 Hb_007617_030--Hb_089140_130 Hb_089140_130--Hb_011316_080 Hb_000847_040 Hb_000847_040 Hb_089140_130--Hb_000847_040 Hb_089140_130--Hb_006594_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0155496 3.73126 0.748251 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0111878 1.92209

CAGE analysis